Evidence map›Paper›PMID 17703195›Full record

ArticleNature protocols2007

Electrophoretic mobility shift assay (EMSA) for detecting protein-nucleic acid interactions.

Lance M Hellman, Michael G Fried

Open access · greenAbstract read
In one paragraph

Article in Nature protocols, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 585 papers.

0numbers the graph read from it
0cells of the map it votes in
585citing papers in PubMed
8.7field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

585 citing papers in PubMed, 1,187 citations in OpenAlex.

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  17. Advances and opportunities for computational interrogation of plant proteins.The Plant journal : for cell and molecular biology · 2026
    Review
  18. Article
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525 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Lance M HellmanDepartment of Molecular and Cellular Biochemistry, University of Kentucky, Lexington, Kentucky 40536-0509, USA.
Michael G Fried
University of Kentucky · US

Funding

COOPERATIVE INTERACTIONS IN DNA REPAIRR01GM070662 · NIGMS · UNIVERSITY OF KENTUCKY · PI FRIED, MICHAEL G. · 2004 to 2010
$1.4M
NIGMS NIH HHS GM-070662NIGMS NIH HHS R01 GM070662
6 · The paper itself

Abstract

The gel electrophoresis mobility shift assay (EMSA) is used to detect protein complexes with nucleic acids. It is the core technology underlying a wide range of qualitative and quantitative analyses for the characterization of interacting systems. In the classical assay, solutions of protein and nucleic acid are combined and the resulting mixtures are subjected to electrophoresis under native conditions through polyacrylamide or agarose gel. After electrophoresis, the distribution of species containing nucleic acid is determined, usually by autoradiography of 32P-labeled nucleic acid. In general, protein-nucleic acid complexes migrate more slowly than the corresponding free nucleic acid. In this protocol, we identify the most important factors that determine the stabilities and electrophoretic mobilities of complexes under assay conditions. A representative protocol is provided and commonly used variants are discussed. Expected outcomes are briefly described. References to extensions of the method and a troubleshooting guide are provided.

Indexed as

Bacterial ProteinsCyclic AMP Receptor ProteinDNA-Binding ProteinsElectrophoretic Mobility Shift AssayEscherichia coliEscherichia coli ProteinsHumansLac OperonLac RepressorsO(6)-Methylguanine-DNA MethyltransferasePromoter Regions, GeneticRepressor ProteinsRNA-Binding ProteinsTranscription FactorsBacterial Proteinscrp protein, E coliCyclic AMP Receptor ProteinDNA-Binding ProteinsEscherichia coli ProteinsLacI protein, E coliLac RepressorsO(6)-Methylguanine-DNA MethyltransferaseRepressor ProteinsRNA-Binding ProteinsTranscription Factors

Identifiers

PMID17703195
PMCPMC2757439
OpenAlexW1976260744

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.