ArticleGenome biology2007
A physical map of the bovine genome.
Article in Genome biology, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.
What it found
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
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Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
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Who cites it
28 citing papers in PubMed, 85 citations in OpenAlex.
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- Expected benefit of genomic selection over forward selection in conifer breeding and deployment.PloS one · 2018Article
- Application of single step genomic BLUP under different uncertain paternity scenarios using simulated data.PloS one · 2017Article
- Linkage disequilibrium, persistence of phase and effective population size estimates in Hereford and Braford cattle.BMC genetics · 2016Article
- A clone-free, single molecule map of the domestic cow (Bos taurus) genome.BMC genomics · 2015Article
- Developing market class specific InDel markers from next generation sequence data in Phaseolus vulgaris L.Frontiers in plant science · 2014Article
- Accuracy of genomic selection in simulated populations mimicking the extent of linkage disequilibrium in beef cattle.BMC genetics · 2011Article
- BAC library resources for map-based cloning and physical map construction in barley (Hordeum vulgare L.).BMC genomics · 2011Article
- A BAC/BIBAC-based physical map of chickpea, Cicer arietinum L.BMC genomics · 2010Article
- A draft physical map of a D-genome cotton species (Gossypium raimondii).BMC genomics · 2010Article
- Analysis of copy number variations among diverse cattle breeds.Genome research · 2010Article
- Assignment of chromosomal locations for unassigned SNPs/scaffolds based on pair-wise linkage disequilibrium estimates.BMC bioinformatics · 2010Article
- Article
- FISH mapping in cattle (Bos taurus L.) is not yet out of fashion.Journal of applied genetics · 2010Article
- Every genome sequence needs a good map.Genome research · 2009Article
- Breakpoint regions and homologous synteny blocks in chromosomes have different evolutionary histories.Genome research · 2009Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
55 authors at 20 institutions in 8 countries.
Funding
Abstract
backgroundCattle are important agriculturally and relevant as a model organism. Previously described genetic and radiation hybrid (RH) maps of the bovine genome have been used to identify genomic regions and genes affecting specific traits. Application of these maps to identify influential genetic polymorphisms will be enhanced by integration with each other and with bacterial artificial chromosome (BAC) libraries. The BAC libraries and clone maps are essential for the hybrid clone-by-clone/whole-genome shotgun sequencing approach taken by the bovine genome sequencing project.
resultsA bovine BAC map was constructed with HindIII restriction digest fragments of 290,797 BAC clones from animals of three different breeds. Comparative mapping of 422,522 BAC end sequences assisted with BAC map ordering and assembly. Genotypes and pedigree from two genetic maps and marker scores from three whole-genome RH panels were consolidated on a 17,254-marker composite map. Sequence similarity allowed integrating the BAC and composite maps with the bovine draft assembly (Btau3.1), establishing a comprehensive resource describing the bovine genome. Agreement between the marker and BAC maps and the draft assembly is high, although discrepancies exist. The composite and BAC maps are more similar than either is to the draft assembly.
conclusionFurther refinement of the maps and greater integration into the genome assembly process may contribute to a high quality assembly. The maps provide resources to associate phenotypic variation with underlying genomic variation, and are crucial resources for understanding the biology underpinning this important ruminant species so closely associated with humans.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.