Evidence map›Paper›PMID 17696611›Full record

ArticlePLoS genetics2007

SREBP controls oxygen-dependent mobilization of retrotransposons in fission yeast.

Alfica Sehgal, Chih-Yung S Lee, Peter J Espenshade

Open access · goldAbstract read
In one paragraph

Article in PLoS genetics, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 40 papers.

0numbers the graph read from it
0cells of the map it votes in
40citing papers in PubMed
5.5field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

40 citing papers in PubMed, 54 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Genome-wide analysis of heat stress-stimulated transposon mobility in the human fungal pathogenProceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  6. Article
  7. Long Terminal Repeat RetrotransposonAntimicrobial agents and chemotherapy · 2021
    Article
  8. Review
  9. Article
  10. Article
  11. Yeast for virus research.Microbial cell (Graz, Austria) · 2017
    Review
  12. Review
  13. Article
  14. Article
  15. Article
  16. Article
  17. Review
  18. Article
  19. Domesticated transposase Kat1 and its fossil imprints induce sexual differentiation in yeast.Proceedings of the National Academy of Sciences of the United States of America · 2014
    Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 1 country.

Alfica SehgalDepartment of Cell Biology, Johns Hopkins University School of Medicine, Baltimore, Maryland, Unites States of America.
Chih-Yung S Lee
Peter J Espenshade
Johns Hopkins Medicine · USJohns Hopkins University · US

Funding

BIOCHEMISTRY, CELLULAR AND MOLECULAR BIOLOGY PROGRAMT32GM007445 · NIGMS · JOHNS HOPKINS UNIVERSITY · PI GREEN, RACHEL · 1985 to 2021
$24.1M
Regulation of Cellular Cholesterol HomeostasisR01HL077588 · NHLBI · JOHNS HOPKINS UNIVERSITY · PI ESPENSHADE, PETER J. · 2004 to 2022
$7.8M
NHLBI NIH HHS HL077588NHLBI NIH HHS R01 HL077588NIGMS NIH HHS GM007445NIGMS NIH HHS T32 GM007445
6 · The paper itself

Abstract

Retrotransposons are mobile genetic elements that proliferate through an RNA intermediate. Transposons do not encode transcription factors and thus rely on host factors for mRNA expression and survival. Despite information regarding conditions under which elements are upregulated, much remains to be learned about the regulatory mechanisms or factors controlling retrotransposon expression. Here, we report that low oxygen activates the fission yeast Tf2 family of retrotransposons. Sre1, the yeast ortholog of the mammalian membrane-bound transcription factor sterol regulatory element binding protein (SREBP), directly induces the expression and mobilization of Tf2 retrotransposons under low oxygen. Sre1 binds to DNA sequences in the Tf2 long terminal repeat that functions as an oxygen-dependent promoter. We find that Tf2 solo long terminal repeats throughout the genome direct oxygen-dependent expression of adjacent coding and noncoding sequences, providing a potential mechanism for the generation of oxygen-dependent gene expression.

Indexed as

Gene Expression Regulation, FungalOrganisms, Genetically ModifiedOxygenRecombination, GeneticRetroelementsSchizosaccharomycesSchizosaccharomyces pombe ProteinsSterol Regulatory Element Binding ProteinsOxygenRetroelementsSchizosaccharomyces pombe ProteinsSre1 protein, S pombeSterol Regulatory Element Binding ProteinsTf2-6 protein, S pombe

Identifiers

PMID17696611
PMCPMC1941750
OpenAlexW2031466997

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.