Evidence map›Paper›PMID 17696609›Full record

ArticlePLoS pathogens2007

Functional genomics highlights differential induction of antiviral pathways in the lungs of SARS-CoV-infected macaques.

Anna de Lang, Tracey Baas, Thomas Teal, Lonneke M Leijten, Brandon Rain, Albert D Osterhaus, Bart L Haagmans, Michael G Katze

Open access · goldAbstract read
In one paragraph

Article in PLoS pathogens, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 44 papers.

0numbers the graph read from it
0cells of the map it votes in
44citing papers in PubMed
5.2field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

44 citing papers in PubMed, 64 citations in OpenAlex.

  1. Review
  2. Review
  3. Review
  4. Article
  5. Review
  6. Article
  7. Severe acute respiratory syndrome coronavirus ORF3a protein activates the NLRP3 inflammasome by promoting TRAF3-dependent ubiquitination of ASC.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2019
    Article
  8. Article
  9. Review
  10. Review
  11. Review
  12. Multi-omic network signatures of disease.Frontiers in genetics · 2014
    Article
  13. Article
  14. Bugs in the system.Immunological reviews · 2013
    Review
  15. Article
  16. Article
  17. Virus discovery: one step beyond.Current opinion in virology · 2013
    Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Anna de LangDepartment of Virology, Erasmus Medical Center, Rotterdam, The Netherlands.
Tracey Baas
Thomas Teal
Lonneke M Leijten
Brandon Rain
Albert D Osterhaus
Bart L Haagmans
Michael G Katze
University of Washington · USErasmus MC · NLErasmus University Rotterdam · NL

Funding

Macaque Model and Gene Expression Profiling of SARSR01HL080621 · NHLBI · UNIVERSITY OF WASHINGTON · PI KATZE, MICHAEL G · 2006 to 2009
$2.5M
NHLBI NIH HHS HL080621-01A1NHLBI NIH HHS R01 HL080621
6 · The paper itself

Abstract

The pathogenesis of severe acute respiratory syndrome coronavirus (SARS-CoV) is likely mediated by disproportional immune responses and the ability of the virus to circumvent innate immunity. Using functional genomics, we analyzed early host responses to SARS-CoV infection in the lungs of adolescent cynomolgus macaques (Macaca fascicularis) that show lung pathology similar to that observed in human adults with SARS. Analysis of gene signatures revealed induction of a strong innate immune response characterized by the stimulation of various cytokine and chemokine genes, including interleukin (IL)-6, IL-8, and IP-10, which corresponds to the host response seen in acute respiratory distress syndrome. As opposed to many in vitro experiments, SARS-CoV induced a wide range of type I interferons (IFNs) and nuclear translocation of phosphorylated signal transducer and activator of transcription 1 in the lungs of macaques. Using immunohistochemistry, we revealed that these antiviral signaling pathways were differentially regulated in distinctive subsets of cells. Our studies emphasize that the induction of early IFN signaling may be critical to confer protection against SARS-CoV infection and highlight the strength of combining functional genomics with immunohistochemistry to further unravel the pathogenesis of SARS.

Indexed as

Gene Expression Regulation, ViralGenomicsMacaca fascicularisAnimalsBiomarkersCytokinesDisease Models, AnimalGene Expression ProfilingImmunohistochemistryInterferon Type ILungOligonucleotide Array Sequence AnalysisSevere Acute Respiratory SyndromeSevere acute respiratory syndrome-related coronavirusSTAT1 Transcription FactorVirus ReplicationBiomarkersCytokinesInterferon Type ISTAT1 Transcription Factor

Identifiers

PMID17696609
PMCPMC1941749
OpenAlexW2083595834

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.