Evidence map›Paper›PMID 17696316›Full record

ArticleACS chemical biology2007

A steric block in translation caused by the antibiotic spectinomycin.

Maria A Borovinskaya, Shinichiro Shoji, James M Holton, Kurt Fredrick, Jamie H D Cate

Abstract read
In one paragraph

Article in ACS chemical biology, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 89 papers.

0numbers the graph read from it
0cells of the map it votes in
89citing papers in PubMed
2.9field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

89 citing papers in PubMed, 153 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Cloning and molecular characterization ofFrontiers in microbiology · 2026
    Article
  5. Article
  6. Article
  7. Article
  8. Review
  9. Article
  10. Article
  11. Article
  12. Article
  13. Development of 2nd generation aminomethyl spectinomycins that overcome native efflux inProceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  14. Article
  15. CBD resistantFrontiers in medicine · 2023
    Article
  16. Review
  17. Article
  18. Article
  19. Article
  20. Article

29 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

Maria A Borovinskaya *Physical Biosciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720.
Shinichiro Shoji *Department of Microbiology, The Ohio State University, Columbus, Ohio 43210.
James M HoltonPhysical Biosciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720.
Kurt FredrickDepartment of Microbiology, The Ohio State University, Columbus, Ohio 43210.
Jamie H D CatePhysical Biosciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720.
Lawrence Berkeley National Laboratory · USThe Ohio State University · USUniversity of California, Berkeley · US

Funding

Transcription-Coupled & Replication-Associated Excision RepairP01CA092584 · NCI · UNIVERSITY OF CALIF-LAWRENC BERKELEY LAB · PI John A. Tainer · 2001 to 2026
$89.6M
The Role of the Ribosome in the Accuracy of TranslationR01GM065050 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI CATE, JAMIE H · 2001 to 2022
$7.4M
Molecular analysis of accurate ribosomal translocationR01GM072528 · NIGMS · OHIO STATE UNIVERSITY · PI Kurt L Fredrick · 2005 to 2026
$5.8M
NCI NIH HHS CA92584NCI NIH HHS P01 CA092584NIGMS NIH HHS GM072528NIGMS NIH HHS GM65050NIGMS NIH HHS R01 GM065050NIGMS NIH HHS R01 GM072528
6 · The paper itself

Abstract

The widely used antibiotic spectinomycin inhibits bacterial protein synthesis by blocking translocation of messenger RNA and transfer RNAs on the ribosome. Here, we show that in crystals of the Escherichia coli 70S ribosome spectinomycin binding traps a distinct swiveling state of the head domain of the small ribosomal subunit. Spectinomycin also alters the rate and completeness of reverse translocation in vitro. These structural and biochemical data indicate that in solution spectinomycin sterically blocks swiveling of the head domain of the small ribosomal subunit and thereby disrupts the translocation cycle.

Indexed as

Anti-Bacterial AgentsEscherichia coliMolecular ConformationProtein BiosynthesisProtein Structure, SecondaryRibosomal ProteinsRNA, BacterialRNA, RibosomalSpectinomycinAnti-Bacterial AgentsRibosomal ProteinsRNA, BacterialRNA, RibosomalSpectinomycin

Identifiers

PMID17696316
PMCPMC4624401
OpenAlexW2087253918

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.