Evidence map›Paper›PMID 17693549›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2007

A pathogenicity island replicon in Staphylococcus aureus replicates as an unstable plasmid.

Carles Ubeda, Peter Barry, José R Penadés, Richard P Novick

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 43 papers.

0numbers the graph read from it
0cells of the map it votes in
43citing papers in PubMed
5.7field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

43 citing papers in PubMed, 74 citations in OpenAlex.

  1. Viruses · 2026
    Article
  2. Article
  3. Staphylococcal mastitis in dairy cows.Frontiers in veterinary science · 2024
    Review
  4. Article
  5. SV40 T-antigen uses a DNA shearing mechanism to initiate origin unwinding.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
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  16. Article
  17. Review
  18. Article
  19. Convergent evolution of pathogenicity islands in helper cos phage interference.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2016
    Article
  20. Replicating methicillin resistance?Nature structural & molecular biology · 2016
    Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 2 countries.

Carles UbedaKimmel Center for Biology and Medicine of the Skirball Institute, New York University School of Medicine, Department of Microbiology, New York, NY 10016, USA.
Peter Barry
José R Penadés
Richard P Novick
New York University · USInstituto Valenciano de Investigaciones Agrarias · ES

Funding

Molecular Biology of TSST-1 and other superantigen toxinsR01AI022159 · NIAID · PUBLIC HEALTH RESEARCH INSTITUTE · PI NOVICK, RICHARD P. · 1985 to 2014
$2.6M
NIAID NIH HHS R01 AI022159NIAID NIH HHS R01-AI22159
6 · The paper itself

Abstract

The SaPIs are 14- to 17-kb mobile pathogenicity islands in staphylococci that carry genes for superantigen toxins and other virulence factors and are responsible for the toxic shock syndrome and other superantigen-related diseases. They reside at specific chromosomal sites and are induced by certain bacteriophages to initiate an excision-replication-packaging program, resulting in their incorporation into small infective phage-like particles. These are responsible for very high transfer frequencies that often equal and sometimes exceed the plaque-forming titer of the inducing phage. The ability of the SaPIs to replicate autonomously defines them as individual replicons and, like other prokaryotic replicons, they possess replicon-specific initiation functions. In this paper, we report identification of the SaPI replication origin (ori) and replication initiation protein (Rep), which has helicase as well as initiation activity. The SaPI oris are binding sites for the respective Rep proteins and consist of multiple oligonucleotide repeats in two sets, flanking an AT-rich region that may be the site of initial melting. Plasmids containing the rep-ori complex plus an additional gene, pri, can replicate autonomously in Staphylococcus aureus but are very unstable, probably because of defective segregation.

Indexed as

Deoxyribonucleases, Type II Site-SpecificDNA HelicasesDNA ReplicationGenomic IslandsPhylogenyPlasmidsProtein BindingRepliconStaphylococcus aureusDeoxyribonucleases, Type II Site-SpecificDNA Helicasesendodeoxyribonuclease SapI

Identifiers

PMID17693549
PMCPMC1964853
OpenAlexW2055955170

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.