Evidence map›Paper›PMID 17693522›Full record

ArticleJournal of bacteriology2007

Characterization and biological role of the O-polysaccharide gene cluster of Yersinia enterocolitica serotype O:9.

Mikael Skurnik, Marta Biedzka-Sarek, Peter S Lübeck, Tea Blom, José Antonio Bengoechea, Camino Pérez-Gutiérrez, Peter Ahrens, Jeffrey Hoorfar

Open access · greenAbstract read
In one paragraph

Article in Journal of bacteriology, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
0.9field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 21 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 4 countries.

Mikael SkurnikDepartment of Bacteriology and Immunology, Haartman Institute, University of Helsinki, Finland. mikael.skurnik@helsinki.fi
Marta Biedzka-Sarek
Peter S Lübeck
Tea Blom
José Antonio Bengoechea
Camino Pérez-Gutiérrez
Peter Ahrens
Jeffrey Hoorfar
University of Helsinki · FIFood Research Institute · SKHospital Universitario Son Dureta · ESTechnical University of Denmark · DK

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Yersinia enterocolitica serotype O:9 is a gram-negative enteropathogen that infects animals and humans. The role of lipopolysaccharide (LPS) in Y. enterocolitica O:9 pathogenesis, however, remains unclear. The O:9 LPS consists of lipid A to which is linked the inner core oligosaccharide, serving as an attachment site for both the outer core (OC) hexasaccharide and the O-polysaccharide (OPS; a homopolymer of N-formylperosamine). In this work, we cloned the OPS gene cluster of O:9 and identified 12 genes organized into four operons upstream of the gnd gene. Ten genes were predicted to encode glycosyltransferases, the ATP-binding cassette polysaccharide translocators, or enzymes required for the biosynthesis of GDP-N-formylperosamine. The two remaining genes within the OPS gene cluster, galF and galU, were not ascribed a clear function in OPS biosynthesis; however, the latter gene appeared to be essential for O:9. The biological functions of O:9 OPS and OC were studied using isogenic mutants lacking one or both of these LPS parts. We showed that OPS and OC confer resistance to human complement and polymyxin B; the OPS effect on polymyxin B resistance could be observed only in the absence of OC.

Indexed as

Multigene FamilyAnti-Bacterial AgentsATP-Binding Cassette TransportersBacterial ProteinsBiosynthetic PathwaysComplement System ProteinsDNA, BacterialDrug Resistance, BacterialGene DeletionGene OrderGlycosyltransferasesHexosaminesHumansMicrobial ViabilityModels, BiologicalMolecular Sequence Data4-formamido-4,6-dideoxymannoseAnti-Bacterial AgentsATP-Binding Cassette TransportersBacterial ProteinsComplement System ProteinsDNA, BacterialGlycosyltransferasesHexosaminesPolymyxin BPolysaccharides, Bacterial

Identifiers

PMID17693522
PMCPMC2168460
OpenAlexW2124860225

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.