Evidence map›Paper›PMID 17693102›Full record

ArticleBlood cells, molecules & diseases

Human chitotriosidase polymorphisms G354R and A442V associated with reduced enzyme activity.

Pauline Lee, Jill Waalen, Karen Crain, Aaron Smargon, Ernest Beutler

Open access · greenAbstract read
In one paragraph

Article in Blood cells, molecules & diseases. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed, 1 pooled it
0.8field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed, 1 synthesis or guideline pooled it, 59 citations in OpenAlex.

  1. Guideline
  2. Review
  3. Article
  4. Article
  5. Long-Term Evaluation of Biomarkers in the Czech Cohort of Gaucher Patients.International journal of molecular sciences · 2023
    Article
  6. Review
  7. Article
  8. Article
  9. CSF chitinases before and after symptom onset in amyotrophic lateral sclerosis.Annals of clinical and translational neurology · 2020
    Article
  10. Chitotriosidase: a marker and modulator of lung disease.European respiratory review : an official journal of the European Respiratory Society · 2020
    Review
  11. Review
  12. Article
  13. Article
  14. Article
  15. Article
  16. Review
  17. Article
  18. Article
  19. Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Pauline LeeThe Scripps Research Institute, Department of Molecular and Experimental Medicine, 10550 North Torrey Pines Road, La Jolla, CA 92037, USA. plee@scripps.edu
Jill Waalen
Karen Crain
Aaron Smargon
Ernest Beutler
Scripps Research Institute · US

Funding

HEMOCHROMATOSIS--EPIDEMIOLOGY AND MOLECULAR MECHANISMSR01DK053505 · NIDDK · SCRIPPS RESEARCH INSTITUTE, THE · PI LEE, PAULINE L · 1998 to 2010
$7.8M
Regulation of the Innate Immune Response to B AnthracisP01CI000095 · CI · SCRIPPS RESEARCH INSTITUTE, THE · PI BOKOCH, GARY M · 2003 to 2007
$4.0M
NCPDCID CDC HHS P01 CI000095NCPDCID CDC HHS P01 CI000095-04NIDDK NIH HHS DK53505-09NIDDK NIH HHS R01 DK053505
6 · The paper itself

Abstract

A common polymorphism in the chitotriosidase gene (CHIT1) exists in which a 24 bp duplication in exon 10 results in aberrant splicing and deletion of 87 nucleotides. In this study, the gene frequency was found to be 0.56 (n=2054) in subjects of Asian ancestry, 0.17 (n=984) in subjects of European ancestry and 0.07 (n=536) in subjects of African ancestry. Notably, the median enzyme activity in wild-type subjects (TT) was much higher in subjects of European ancestry (2.69 mU/ml, n=202 subjects), than subjects of African (2.57 mU/ml, n=230 subjects) (P<0.0001) and Asian ancestry (0.86 mU/ml, n=114 subjects) (P<0.0001). The question of why chitotriosidase deficiency exists at such a high frequency is a challenging one. We postulated that if there was a selective advantage for chitotriosidase deficiency then there would be polymorphisms that would be associated with reduced enzyme activity independent of the 24 bp duplication. We found that the G102S and the A442G polymorphisms found occurring in subjects of all ancestries were not significantly associated with a reduction of enzyme activity. In contrast, the G354R (P<0.0001) and the A442V (P=0.0013) polymorphisms occurring predominantly in subjects of African ancestry were significantly associated with reduced chitotriosidase activity. We also investigated the possibility that chitotriosidase deficiency was associated with tuberculosis or with atopy, including allergic rhinitis, contact dermatitis, food or drug allergies and asthma.

Indexed as

HaplotypesPolymorphism, GeneticAllelesAsian PeopleBlack PeopleGenetic Predisposition to DiseaseGenotypeHexosaminidasesHumansHypersensitivityTuberculosisWhite PeoplechitotriosidaseHexosaminidases

Identifiers

PMID17693102
PMCPMC2696477
OpenAlexW2078710724

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.