Evidence map›Paper›PMID 17688957›Full record

ArticleMolecular and biochemical parasitology2007

Expression and biochemical characterization of Plasmodium falciparum DNA ligase I.

Jeffrey S Buguliskis, Louis J Casta, Charles E Butz, Yoshihiro Matsumoto, Theodore F Taraschi

Open access · greenAbstract read
In one paragraph

Article in Molecular and biochemical parasitology, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
1.6field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 22 citations in OpenAlex.

  1. mSphere · 2026
    Article
  2. Article
  3. Article
  4. Article
  5. Uracil moieties inFEBS open bio · 2018
    Article
  6. The Sole DNA Ligase inFrontiers in cellular and infection microbiology · 2018
    Article
  7. Article
  8. Article
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Jeffrey S BuguliskisDepartment of Pathology, Anatomy and Cell Biology, Thomas Jefferson University, 1020 Locust Street, Philadelphia, PA 19107-6731, United States.
Louis J Casta
Charles E Butz
Yoshihiro Matsumoto
Theodore F Taraschi
Thomas Jefferson University · USFox Chase Cancer Center · US

Funding

DNA BASE EXCISION REPAIR IN PLASMODIUM FALCIPARUMR01AI048567 · NIAID · THOMAS JEFFERSON UNIVERSITY · PI TARASCHI, THEODORE F · 2001 to 2005
$1.7M
NIAID NIH HHS R01 AI048567NIAID NIH HHS R01 AI48567
6 · The paper itself

Abstract

We report that Plasmodium falciparum (Pf) encodes a 912 amino acid ATP-dependent DNA ligase. Protein sequence analysis of Pf DNA ligase I indicates a strong sequence similarity, particularly in the C-terminal region, to DNA ligase I homologues. The activity of recombinant Pf DNA ligase I (PfLigI) was investigated using protein expressed in HEK293 cells. The PfLigI gene product is approximately 94kDa and catalyzes phosphodiester bond formation on a singly nicked DNA substrate. The enzyme is most active at alkaline pH (8.5) and with Mg(2+) or Mn(2+) and ATP as cofactors. Kinetic studies of PfLigI revealed that the enzyme has similar substrate affinity (K(m) 2.6nM) as compared to human DNA ligase I and k(cat) (2.3x10(-3)s(-1)) and k(cat)/K(m) (8.8x10(5)M(-1)s(-1)) which are similar to other ATP-dependent DNA ligases. PfLigI was able to join RNA-DNA substrates only when the RNA sequence was upstream of the nick, confirming that it is DNA ligase I and has no associated DNA ligase III like activity.

Indexed as

Adenosine TriphosphateAmino Acid SequenceAnimalsCations, DivalentCell LineCloning, MolecularCoenzymesDNADNA Ligase ATPDNA LigasesEnzyme StabilityGene ExpressionHumansHydrogen-Ion ConcentrationMagnesiumManganeseAdenosine TriphosphateCations, DivalentCoenzymesDNADNA Ligase ATPDNA LigasesLIG1 protein, humanMagnesiumManganeseProtozoan Proteins

Identifiers

PMID17688957
PMCPMC2692355
OpenAlexW2066037264

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.