Evidence map›Paper›PMID 17684475›Full record

Trial reportThe pharmacogenomics journal2008

The mitochondrial pharmacogenomics of haplogroup T: MTND2*LHON4917G and antiretroviral therapy-associated peripheral neuropathy.

J A Canter, D W Haas, A R Kallianpur, M D Ritchie, G K Robbins, R W Shafer, D B Clifford, D G Murdock, T Hulgan

Abstract readRandomized Controlled Trial
PubMed Publisher
In one paragraph

Trial report in The pharmacogenomics journal, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
1.7field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 61 citations in OpenAlex.

  1. Trial
  2. Trial
  3. Article
  4. Article
  5. Review
  6. Article
  7. Article
  8. Review
  9. Article
  10. Review
  11. Article
  12. Genetic, transcriptomic, and epigenetic studies of HIV-associated neurocognitive disorder.Journal of acquired immune deficiency syndromes (1999) · 2014
    Review
  13. Review
  14. Review
  15. Article
  16. Article
  17. Article
  18. Article
  19. HIV-associated sensory neuropathy: risk factors and genetics.Current pain and headache reports · 2012
    Review
  20. Individualization of antiretroviral therapy.Pharmacogenomics and personalized medicine · 2012
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 5 institutions in 1 country.

J A CanterCenter for Human Genetics Research, Department of Molecular Physiology and Biophysics, Vanderbilt University School of Medicine, Nashville, TN 37212, USA. jeff.canter@vanderbilt.edu
D W Haas
A R Kallianpur
M D Ritchie
G K Robbins
R W Shafer
D B Clifford
D G Murdock
T Hulgan
Vanderbilt University · USCenter for Human Genetics · USMassachusetts General Hospital · USStanford University · USWashington University in St. Louis · US

Funding

WOMEN'S HEALTH AGENDAU01AI027659 · NIAID · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI KURITZKES, DANIEL R · 1988 to 2006
$11.8M
WOMEN'S HEALTH AGENDAU01AI027666 · NIAID · STANFORD UNIVERSITY · PI ZOLOPA, ANDREW RICHARD · 1988 to 2006
$11.4M
VIROLOGY COREP30AI054999 · NIAID · VANDERBILT UNIVERSITY · PI D'AQUILA, RICHARD · 2003 to 2011
$10.3M
NIAID NIH HHS AI 002508NIAID NIH HHS AI 27659NIAID NIH HHS AI 27666NIAID NIH HHS AI 54999
6 · The paper itself

Abstract

Peripheral neuropathy (PN) due to mitochondrial injury complicates HIV therapy with some nucleoside reverse transcriptase inhibitors (NRTIs). Variation in the mitochondrial genome may influence susceptibility to NRTI toxicities. Two non-synonymous mitochondrial DNA polymorphisms, MTND1*LHON4216C (4216C) and MTND2*LHON4917G (4917G) were characterized in HIV-infected participants exposed to NRTIs in a randomized clinical trial. Among 250 self-identified white, non-Hispanic participants, symptomatic PN (> or = grade 1) developed in 70 (28%). Both 4216C (odds ratio (OR)=1.98 (95% confidence interval (CI) 1.05-3.75); P=0.04) and 4917G (OR=2.93 (95% CI 1.25-6.89); P=0.01) were more frequent in PN cases. These two polymorphisms remained independently associated with PN after adjusting for age, baseline CD4 count, plasma HIV RNA level, and NRTI randomization arm; 4216C (OR=2.0 (95% CI 1.1-4.0) P=0.04) and 4917G (OR=5.5 (95% CI 1.6-18.7) P<0.01). When 4917G individuals were excluded from the analysis, the association with 4216C was no longer seen. The mitochondrial 4917G polymorphism may increase susceptibility to NRTI-associated PN.

Indexed as

AdultAntiretroviral Therapy, Highly ActiveDNADNA, MitochondrialFemaleGene FrequencyGenotypeHaplotypesHumansMaleMiddle AgedMitochondriaNADH DehydrogenasePeripheral Nervous System DiseasesPolymorphism, GeneticReverse Transcriptase Polymerase Chain ReactionDNADNA, MitochondrialNADH DehydrogenaseNADH dehydrogenase subunit 2, human

Identifiers

PMID17684475
OpenAlexW2049871886

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.