Evidence map›Paper›PMID 17683199›Full record

ArticlePLoS biology2007

Structure of the chloroplast ribosome: novel domains for translation regulation.

Andrea L Manuell, Joel Quispe, Stephen P Mayfield

Open access · goldAbstract read
In one paragraph

Article in PLoS biology, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 47 papers.

0numbers the graph read from it
0cells of the map it votes in
47citing papers in PubMed
1.6field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

47 citing papers in PubMed, 86 citations in OpenAlex.

  1. Review
  2. RiboScreenBiomedicines · 2026
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  11. Integrating transcriptome and metabolome reveals molecular networks involved in genetic and environmental variation in tobacco.DNA research : an international journal for rapid publication of reports on genes and genomes · 2020
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Andrea L ManuellDepartment of Cell Biology, The Scripps Research Institute, La Jolla, California, United States of America.
Joel Quispe
Stephen P Mayfield
Scripps Research Institute · US

Funding

WORKSHOPS AND TRAININGP41RR017573 · NCRR · SCRIPPS RESEARCH INSTITUTE, THE · PI CARRAGHER, BRIDGET OLIVIA · 2002 to 2011
$14.2M
WEB BASED DOCUMENTATION &TUTORIALS FOR YAMMPP41RR012255 · NCRR · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI BROOKS, CHARLES L · 1997 to 2009
$10.4M
PROTEIN/RNA INTERACTIONS IN TRANSLATIONAL REGULATIONR01GM054659 · NIGMS · SCRIPPS RESEARCH INSTITUTE · PI MAYFIELD, STEPHEN P · 1997 to 2005
$1.7M
NCRR NIH HHS P41 RR012255NCRR NIH HHS P41 RR017573NCRR NIH HHS RR12255NCRR NIH HHS RR17573NIGMS NIH HHS GM054659NIGMS NIH HHS R01 GM054659
6 · The paper itself

Abstract

Gene expression in chloroplasts is controlled primarily through the regulation of translation. This regulation allows coordinate expression between the plastid and nuclear genomes, and is responsive to environmental conditions. Despite common ancestry with bacterial translation, chloroplast translation is more complex and involves positive regulatory mRNA elements and a host of requisite protein translation factors that do not have counterparts in bacteria. Previous proteomic analyses of the chloroplast ribosome identified a significant number of chloroplast-unique ribosomal proteins that expand upon a basic bacterial 70S-like composition. In this study, cryo-electron microscopy and single-particle reconstruction were used to calculate the structure of the chloroplast ribosome to a resolution of 15.5 A. Chloroplast-unique proteins are visualized as novel structural additions to a basic bacterial ribosome core. These structures are located at optimal positions on the chloroplast ribosome for interaction with mRNAs during translation initiation. Visualization of these chloroplast-unique structures on the ribosome, combined with mRNA cross-linking, allows us to propose a model for translation initiation in chloroplasts in which chloroplast-unique ribosomal proteins interact with plastid-specific translation factors and RNA elements to facilitate regulated translation of chloroplast mRNAs.

Indexed as

ChloroplastsGene Expression Regulation, PlantProtein BiosynthesisProtein Structure, QuaternaryProtein Structure, TertiaryProtein Subunits5' Untranslated RegionsAlgal ProteinsAmino Acid SequenceAnimalsBacterial ProteinsChlamydomonas reinhardtiiCryoelectron MicroscopyModels, MolecularMolecular Sequence DataNucleic Acid Conformation5' Untranslated RegionsAlgal ProteinsBacterial ProteinsProtein SubunitsRNA, Messenger

Identifiers

PMID17683199
PMCPMC1939882
OpenAlexW1982790821

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.