Evidence map›Paper›PMID 17681272›Full record

ArticleBiochemical and biophysical research communications2007

A SWI/SNF- and INO80-dependent nucleosome movement at the INO1 promoter.

Jason Ford, Oluwafemi Odeyale, Antonious Eskandar, Nafila Kouba, Chang-Hui Shen

Open access · greenAbstract read
In one paragraph

Article in Biochemical and biophysical research communications, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
1.5field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 33 citations in OpenAlex.

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  15. Activator-dependent recruitment of SWI/SNF and INO80 during INO1 activation.Biochemical and biophysical research communications · 2008
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Jason FordDepartment of Biology, College of Staten Island, City University of New York, Staten Island, NY 10314, USA.
Oluwafemi Odeyale
Antonious Eskandar
Nafila Kouba
Chang-Hui Shen
City University of New York · USCollege of Staten Island · US

Funding

Functional characterization of remodeling complex Ino80pR15GM067730 · NIGMS · COLLEGE OF STATEN ISLAND · PI SHEN, CHANG-HUI · 2003 to 2004
$184k
NIGMS NIH HHS GM67730NIGMS NIH HHS R15 GM067730
6 · The paper itself

Abstract

Transcriptional activation in yeast INO1 chromatin was studied using the indirect end-labeling technique. INO1 chromatin is organized into an ordered, overlapping nucleosomal array under repressing conditions. Nucleosome positions were only disrupted at the promoter region under inducing conditions in the presence of SWI/SNF and INO80. Mutants lacking either remodeler demonstrated identical positioning patterns as the wild type under repressing conditions. This indicates that these two remodelers are responsible and essential for local nucleosomal mobilization at the INO1 promoter. The area of local nucleosome movement is consistent with the previously identified region of histone deacetylation activity. In light of these findings, we suggest that nucleosomes subject to local mobilization are also targets for local histone modifications.

Indexed as

Promoter Regions, GeneticTranscriptional ActivationAdenosine TriphosphatasesChromatin Assembly and DisassemblyDNA-Binding ProteinsGene DeletionMyo-Inositol-1-Phosphate SynthaseNucleosomesSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsTranscription FactorsAdenosine TriphosphatasesDNA-Binding ProteinsINO1 protein, S cerevisiaeINO80 complex, S cerevisiaeMyo-Inositol-1-Phosphate SynthaseNucleosomesSaccharomyces cerevisiae ProteinsSNF2 protein, S cerevisiaeTranscription Factors

Identifiers

PMID17681272
PMCPMC2034749
OpenAlexW1969575412

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.