Evidence map›Paper›PMID 17675374›Full record

ArticleJournal of bacteriology2007

A Serratia marcescens OxyR homolog mediates surface attachment and biofilm formation.

Robert M Q Shanks, Nicholas A Stella, Eric J Kalivoda, Megan R Doe, Dawn M O'Dee, Kira L Lathrop, Feng Li Guo, Gerard J Nau

Open access · greenAbstract readComparative Study
In one paragraph

Article in Journal of bacteriology, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 79 papers.

0numbers the graph read from it
0cells of the map it votes in
79citing papers in PubMed
1.9field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

79 citing papers in PubMed, 117 citations in OpenAlex.

  1. OxyR regulates the oxidative stress response inApplied and environmental microbiology · 2026
    Article
  2. International journal of molecular sciences · 2026
    Review
  3. From Environmental Organism to Nosocomial Threat:Antibiotics (Basel, Switzerland) · 2026
    Review
  4. Carbapenem-ResistantAntibiotics (Basel, Switzerland) · 2026
    Review
  5. Article
  6. International journal of molecular sciences · 2025
    Review
  7. Article
  8. Article
  9. Synthesis of Lipopeptides Using Vegetable Oils by Newly Isolated Strain ofInternational journal of molecular sciences · 2025
    Article
  10. Article
  11. OxyR contributes to the oxidative stress capacity and virulence of hypervirulentFrontiers in cellular and infection microbiology · 2025
    Article
  12. Article
  13. Biofilm · 2023
    Article
  14. Article
  15. Article
  16. Tryptone-stabilized silver nanoparticles' potential to mitigate planktonic and biofilm growth forms of Serratia marcescens.Journal of biological inorganic chemistry : JBIC : a publication of the Society of Biological Inorganic Chemistry · 2023
    Article
  17. Article
  18. Article
  19. Article
  20. Insights of OxyR role in mechanisms of host-pathogen interaction of Corynebacterium diphtheriae.Brazilian journal of microbiology : [publication of the Brazilian Society for Microbiology] · 2022
    Article

19 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Robert M Q ShanksCharles T Campbell Laboratory of Ophthalmic Microbiology, Department of Ophthalmology, UPMC Eye Center, Pittsburgh, PA 15213, USA. shanksrm@upmc.edu
Nicholas A Stella
Eric J Kalivoda
Megan R Doe
Dawn M O'Dee
Kira L Lathrop
Feng Li Guo
Gerard J Nau
University of Pittsburgh · US

Funding

Virus Production and Manipulation of Protein/Gene Expression ModuleP30EY008098 · NEI · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI Ian A Sigal · 1989 to 2026
$17.8M
NEI NIH HHS EY08098NEI NIH HHS P30 EY008098
6 · The paper itself

Abstract

OxyR is a conserved bacterial transcription factor with a regulatory role in oxidative stress response. From a genetic screen for genes that modulate biofilm formation in the opportunistic pathogen Serratia marcescens, mutations in an oxyR homolog and predicted fimbria structural genes were identified. S. marcescens oxyR mutants were severely impaired in biofilm formation, in contrast to the hyperbiofilm phenotype exhibited by oxyR mutants of Escherichia coli and Burkholderia pseudomallei. Further analysis revealed that OxyR plays a role in the primary attachment of cells to a surface. Similar to what is observed in other bacterial species, S. marcescens OxyR is required for oxidative stress resistance. Mutations in oxyR and type I fimbrial genes resulted in severe defects in fimbria-associated phenotypes, revealing roles in cell-cell and cell-biotic surface interactions. Transmission electron microscopy revealed the absence of fimbria-like surface structures on an OxyR-deficient strain and an enhanced fimbrial phenotype in strains bearing oxyR on a multicopy plasmid. The hyperfimbriated phenotype conferred by the multicopy oxyR plasmid was absent in a type I fimbrial mutant background. Real-time reverse transcriptase PCR indicated an absence of transcripts from a fimbrial operon in an oxyR mutant that were present in the wild type and a complemented oxyR mutant strain. Lastly, chromosomal P(lac)-mediated expression of fimABCD was sufficient to restore wild-type levels of yeast agglutination and biofilm formation to an oxyR mutant. Together, these data support a model in which OxyR contributes to early stages of S. marcescens biofilm formation by influencing fimbrial gene expression.

Indexed as

Bacterial AdhesionBacterial ProteinsBiofilmsBurkholderia pseudomalleiDNA Transposable ElementsEscherichia coliFimbriae, BacterialGene DeletionGene DosageGene Expression Regulation, BacterialGenetic Complementation TestMicroscopy, Electron, TransmissionMutagenesis, InsertionalOxidative StressReverse Transcriptase Polymerase Chain ReactionRNA, BacterialBacterial ProteinsDNA Transposable ElementsRNA, BacterialRNA, MessengerTranscription Factors

Identifiers

PMID17675374
PMCPMC2168423
OpenAlexW2104520155

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.