Evidence map›Paper›PMID 17675348›Full record

ArticleBiophysical journal2007

Affinity-matured recombinant antibody fragments analyzed by single-molecule force spectroscopy.

Julia Morfill, Kerstin Blank, Christian Zahnd, Beatrice Luginbühl, Ferdinand Kühner, Kay-E Gottschalk, Andreas Plückthun, Hermann E Gaub

Open access · bronzeAbstract read
In one paragraph

Article in Biophysical journal, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed
4.0field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed, 85 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Review
  5. Immune cells use active tugging forces to distinguish affinity and accelerate evolution.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
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  8. Article
  9. The CAR T-Cell Mechanoimmunology at a Glance.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2020
    Review
  10. Article
  11. Article
  12. Article
  13. Review
  14. Article
  15. Investigating single molecule adhesion by atomic force spectroscopy.Journal of visualized experiments : JoVE · 2015
    Article
  16. Article
  17. Review
  18. Article
  19. Single-molecule dissection of the high-affinity cohesin-dockerin complex.Proceedings of the National Academy of Sciences of the United States of America · 2012
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 2 countries.

Julia MorfillLehrstuhl für Angewandte Physik and Center for Nanoscience, Ludwig-Maximilians-Universität München, Munich, Germany. julia@morfill.de
Kerstin Blank
Christian Zahnd
Beatrice Luginbühl
Ferdinand Kühner
Kay-E Gottschalk
Andreas Plückthun
Hermann E Gaub
Center for NanoScience · DEUniversity of Zurich · CH

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

For many applications, antibodies need to be engineered toward maximum affinity. Strategies are in demand to especially optimize this process toward slower dissociation rates, which correlate with the (un)binding forces. Using single-molecule force spectroscopy, we have characterized three variants of a recombinant antibody single-chain Fv fragment. These variants were taken from different steps of an affinity maturation process. Therefore, they are closely related and differ from each other by a few mutations only. The dissociation rates determined with the atomic force microscope differ by one order of magnitude and agree well with the values obtained from surface plasmon resonance measurements. However, the effective potential width of the binding complexes, which was derived from the dynamic force spectroscopy measurements, was found to be the same for the different mutants. The large potential width of 0.9 nm indicates that both the binding pocket and the peptide deform significantly during the unbinding process.

Indexed as

Binding Sites, AntibodyBiophysicsCloning, MolecularImmunoglobulin FragmentsKineticsLigandsMicroscopy, Atomic ForceModels, ChemicalModels, StatisticalMutationSensitivity and SpecificitySpectrum AnalysisSurface Plasmon ResonanceImmunoglobulin FragmentsLigands

Identifiers

PMID17675348
PMCPMC2072072
OpenAlexW2129160641

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.