Evidence map›Paper›PMID 17671166›Full record

ArticleMolecular biology of the cell2007

Aberrant chromatin remodeling by retinoic acid receptor alpha fusion proteins assessed at the single-cell level.

Jihui Qiu, Ying Huang, Guoqiang Chen, Zhu Chen, David J Tweardy, Shuo Dong

Open access · greenAbstract read
In one paragraph

Article in Molecular biology of the cell, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.9field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 13 citations in OpenAlex.

  1. CD34Cells · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Jihui QiuDepartment of Medicine, Section of Infectious Disease, Baylor College of Medicine, Houston, TX 77030, USA.
Ying Huang
Guoqiang Chen
Zhu Chen
David J Tweardy
Shuo Dong
Shanghai Institute of Hematology · CNBaylor College of Medicine · US

Funding

MECHANISMS OF G-CSF RECEPTOR MEDIATED DIFFERENTIATIONR01CA072261 · NCI · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI TWEARDY, DAVID JOHN · 1996 to 2006
$1.7M
STAT3 INTERACTIONS IN CELL GROWTH AND DIFFERENTIATIONR01CA086430 · NCI · BAYLOR COLLEGE OF MEDICINE · PI TWEARDY, DAVID JOHN · 1999 to 2003
$1.2M
Analysis of APL-Fusion Retinoic Acid Receptor ProteinsR21CA119080 · NCI · BAYLOR COLLEGE OF MEDICINE · PI DONG, SHUO · 2005 to 2006
$255k
NCI NIH HHS CA-86430NCI NIH HHS R01 CA072261NCI NIH HHS R01 CA086430NCI NIH HHS R01 CA-72261NCI NIH HHS R21 CA-119080NCI NIH HHS R21 CA119080
6 · The paper itself

Abstract

Acute promyelocytic leukemia (APL) is characterized by specific chromosomal translocations, which generate fusion proteins such as promyelocytic leukemia (PML)-retinoic acid receptor (RAR)alpha and promyelocytic leukemia zinc finger (PLZF)-RARalpha (X-RARalpha). In this study, we have applied lac operator array systems to study the effects of X-RARalpha versus wild-type RARalpha on large-scale chromatin structure. The targeting of these enhanced cyan fluorescent protein-lac repressor-tagged RARalpha-containing proteins to the gene-amplification chromosomal region by lac operator repeats led to local chromatin condensation, recruitment of nuclear receptor corepressor, and histone deacetylase complex. The addition of retinoic acid (RA) induced large-scale chromatin decondensation in cells expressing RARalpha; however, cells expressing X-RARalpha, especially PML-RARalpha, demonstrated insensitive response to this effect of all-trans retinoic acid (ATRA). Although we did not reveal differences in RA-dependent colocalization of either silencing mediator for retinoid and thyroid or steroid receptor coactivator (SRC)-1 with RARalpha versus X-RARalpha, the hormone-independent association between SRC-1 and X-RARalpha on the array has been identified. Rather, compared with cells expressing RARalpha, fluorescence recovery after photobleaching of live transfected cells, demonstrated decreased mobility of SRC-1 on the X-RARalpha-bound chromatin. Thus, the impaired ability of APL fusion proteins to activate gene transcription in response to ATRA corresponds to their reduced ability to remodel chromatin, which may link to their ability to impair the mobility of key nuclear receptor coregulators.

Indexed as

Chromatin Assembly and DisassemblyBacterial ProteinsDNA-Binding ProteinsGreen Fluorescent ProteinsHeLa CellsHistone AcetyltransferasesHumansLuminescent ProteinsNuclear Receptor Coactivator 1Nuclear Receptor Co-Repressor 2Oncogene Proteins, FusionOperator Regions, GeneticProtein BindingProtein TransportRecombinant Fusion ProteinsRepressor ProteinsBacterial ProteinsCyan Fluorescent ProteinDNA-Binding ProteinsGreen Fluorescent ProteinsHistone AcetyltransferasesLuminescent ProteinsNCOA1 protein, humanNCOR2 protein, humanNuclear Receptor Coactivator 1Nuclear Receptor Co-Repressor 2Oncogene Proteins, FusionRecombinant Fusion ProteinsRepressor ProteinsTranscription FactorsTretinoinyellow fluorescent protein, Bacteria

Identifiers

PMID17671166
PMCPMC1995740
OpenAlexW2161932515

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.