Evidence map›Paper›PMID 17668377›Full record

ArticleAmerican journal of human genetics2007

Evolutionary conservation of a coding function for D4Z4, the tandem DNA repeat mutated in facioscapulohumeral muscular dystrophy.

Jannine Clapp, Laura M Mitchell, Daniel J Bolland, Judy Fantes, Anne E Corcoran, Paul J Scotting, John A L Armour, Jane E Hewitt

Open access · bronzeAbstract read
In one paragraph

Article in American journal of human genetics, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 114 papers.

0numbers the graph read from it
0cells of the map it votes in
114citing papers in PubMed
4.6field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

114 citing papers in PubMed, 164 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Review
  8. Article
  9. Article
  10. Review
  11. Review
  12. Deciphering Facioscapulohumeral Dystrophy in the clinical trials era: where are we now?Acta myologica : myopathies and cardiomyopathies : official journal of the Mediterranean Society of Myology · 2025
    Review
  13. Muscular Dystrophies.Advances in experimental medicine and biology · 2025
    Review
  14. Review
  15. Review
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article

54 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 1 country.

Jannine ClappInstitute of Genetics, The University of Nottingham, Queen's Medical Centre, Nottingham, NG7 2UH, and Medical Research Council Human Genetics Unit, Western General Hospital, Edinburgh, UK.
Laura M Mitchell
Daniel J Bolland
Judy Fantes
Anne E Corcoran
Paul J Scotting
John A L Armour
Jane E Hewitt
University of Nottingham · GBQueen's Medical Centre · GBBabraham Institute · GBMRC Human Genetics Unit

Funding

Biotechnology and Biological Sciences Research Council BBS/E/B/0000C163Wellcome TrustWellcome Trust 066536/z/01/z
6 · The paper itself

Abstract

Facioscapulohumeral muscular dystrophy (FSHD) is caused by deletions within the polymorphic DNA tandem array D4Z4. Each D4Z4 repeat unit has an open reading frame (ORF), termed "DUX4," containing two homeobox sequences. Because there has been no evidence of a transcript from the array, these deletions are thought to cause FSHD by a position effect on other genes. Here, we identify D4Z4 homologues in the genomes of rodents, Afrotheria (superorder of elephants and related species), and other species and show that the DUX4 ORF is conserved. Phylogenetic analysis suggests that primate and Afrotherian D4Z4 arrays are orthologous and originated from a retrotransposed copy of an intron-containing DUX gene, DUXC. Reverse-transcriptase polymerase chain reaction and RNA fluorescence and tissue in situ hybridization data indicate transcription of the mouse array. Together with the conservation of the DUX4 ORF for >100 million years, this strongly supports a coding function for D4Z4 and necessitates re-examination of current models of the FSHD disease mechanism.

Indexed as

Evolution, MolecularTandem Repeat SequencesAmino Acid SequenceAnimalsConserved SequenceHomeodomain ProteinsHumansIn Situ Hybridization, FluorescenceMammalsMiceMolecular Sequence DataMuscular Dystrophy, FacioscapulohumeralMutationPhylogenyPrimatesSequence Analysis, DNADUX4L1 protein, humanHomeodomain Proteins

Identifiers

PMID17668377
PMCPMC1950813
OpenAlexW2013560484

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.