Evidence map›Paper›PMID 17666526›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2007

Random linker-insertion mutagenesis to identify functional domains of herpes simplex virus type 1 glycoprotein B.

Erick Lin, Patricia G Spear

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 57 papers.

0numbers the graph read from it
0cells of the map it votes in
57citing papers in PubMed
4.3field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

57 citing papers in PubMed, 78 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Protective anti-gB neutralizing antibodies targeting two vulnerable sites for EBV-cell membrane fusion.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  7. Article
  8. The structural basis of herpesvirus entry.Nature reviews. Microbiology · 2021
    Review
  9. Entry of Alphaherpesviruses.Current issues in molecular biology · 2021
    Review
  10. Article
  11. Article
  12. Herpes Simplex Virus Cell Entry Mechanisms: An Update.Frontiers in cellular and infection microbiology · 2020
    Review
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Herpes simplex virus Membrane Fusion.Advances in anatomy, embryology, and cell biology · 2017
    Review
  19. Two distinct trimeric conformations of natively membrane-anchored full-length herpes simplex virus 1 glycoprotein B.Proceedings of the National Academy of Sciences of the United States of America · 2016
    Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Erick LinDepartment of Microbiology-Immunology, Feinberg School of Medicine, Northwestern University, MC S213, 320 East Superior Street, Chicago, IL 60611, USA.
Patricia G Spear
Northwestern University · US

Funding

MEDICAL SCIENTIST TRAINING PROGRAMT32GM008152 · NIGMS · NORTHWESTERN UNIVERSITY AT CHICAGO · PI ARDEHALI, HOSSEIN · 1987 to 2021
$24.0M
HERPESVIRUS GENE EXPRESSION IN TRANSFORMED CELLSR01CA021776 · NCI · UNIVERSITY OF CHICAGO · PI LONGNECKER, RICHARD M · 1985 to 2017
$4.2M
ENTRY OF HERPES SIMPLEX VIRUS INTO CELLSR37AI036293 · NIAID · NORTHWESTERN UNIVERSITY AT CHICAGO · PI SPEAR, PATRICIA G · 1999 to 2008
$3.1M
NEURONAL MEMBRANE FUSION INDUCED BY HSV-1 GLYCOPROTEINSF30NS049726 · NINDS · NORTHWESTERN UNIVERSITY AT CHICAGO · PI LIN, ERICK · 2004 to 2007
$166k
ENTRY OF HERPES SIMPLEX VIRUS INTO CELLSR01AI036293 · NIAID · NORTHWESTERN UNIVERSITY · PI SPEAR, PATRICIA G · 1994 to 1998
–
HERPESVIRUS GENE EXPRESSION IN TRANSFORMED CELLSR37CA021776 · NCI · UNIVERSITY OF CHICAGO · PI SPEAR, PATRICIA G · 1987 to 1994
–
NCI NIH HHS CA 21776NCI NIH HHS R01 CA021776NIAID NIH HHS AI 36293NIAID NIH HHS R37 AI036293NIGMS NIH HHS 5T32 GM008152NIGMS NIH HHS T32 GM008152NINDS NIH HHS F30 NS049726
6 · The paper itself

Abstract

Herpes simplex virus glycoprotein B (gB) is one of four glycoproteins essential for viral entry and cell fusion. Recently, an x-ray structure of the nearly full-length trimeric gB ectodomain was determined. Five structural domains and two linker regions were identified in what is probably a postfusion conformation. To identify functional domains of gB, we performed random linker-insertion mutagenesis. Analyses of 81 mutants revealed that only 27 could fold to permit processing and transport of gB to the cell surface. These 27 mutants fell into three categories. Insertions into two regions excluded from the solved structure (the N terminus and the C-terminal cytoplasmic tail) had no negative effect on cell fusion and viral entry activity, identifying regions that can tolerate altered structure without loss of function. Insertions into a disordered region in domain II and the adjacent linker region also permitted partial cell fusion and viral entry activity. Insertions at 16 other positions resulted in loss of cell fusion and viral entry activity, despite detectable levels of cell surface expression. Four of these insertion sites were not included in the solved structure. Two were between residues exposed to a cavity that is too small to accommodate the 5-amino acid insertions, consistent with the solved structure being different from the native prefusion structure. Ten were between residues exposed to the surface of the trimer, identifying regions that may be critical for interactions with other viral proteins or cellular components or for transitions from the prefusion to postfusion state.

Indexed as

Mutagenesis, InsertionalAnimalsCHO CellsCricetinaeCricetulusMembrane FusionMembrane GlycoproteinsProtein Structure, TertiaryStructure-Activity RelationshipViral Envelope Proteinsglycoprotein B, SimplexvirusG protein, vesicular stomatitis virusMembrane GlycoproteinsViral Envelope Proteins

Identifiers

PMID17666526
PMCPMC1941792
OpenAlexW2048948277

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.