ArticleMolecular genetics and genomics : MGG2007
Structure of two melon regions reveals high microsynteny with sequenced plant species.
Article in Molecular genetics and genomics : MGG, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
17 citing papers in PubMed.
- Identification of CCCH Zinc Finger Proteins Family in Moso Bamboo (Frontiers in plant science · 2020Article
- Comparative Genomic Analysis of theFrontiers in plant science · 2016Article
- High level of microsynteny and purifying selection affect the evolution of WRKY family in Gramineae.Development genes and evolution · 2016Article
- Comparative genomic analysis of the WRKY III gene family in populus, grape, arabidopsis and rice.Biology direct · 2015Article
- Interspecific and intraspecific gene variability in a 1-Mb region containing the highest density of NBS-LRR genes found in the melon genome.BMC genomics · 2014Article
- High presence/absence gene variability in defense-related gene clusters of Cucumis melo.BMC genomics · 2013Article
- SNP genotyping in melons: genetic variation, population structure, and linkage disequilibrium.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2013Article
- Ancestral synteny shared between distantly-related plant species from the asterid (Coffea canephora and Solanum Sp.) and rosid (Vitis vinifera) clades.BMC genomics · 2012Article
- Codominant PCR-based markers and candidate genes for powdery mildew resistance in melon (Cucumis melo L.).TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2011Article
- Sequencing of 6.7 Mb of the melon genome using a BAC pooling strategy.BMC plant biology · 2010Article
- Genome-wide BAC-end sequencing of Cucumis melo using two BAC libraries.BMC genomics · 2010Article
- A genetic map of melon highly enriched with fruit quality QTLs and EST markers, including sugar and carotenoid metabolism genes.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2010Article
- Microcollinearity in an ethylene receptor coding gene region of the Coffea canephora genome is extensively conserved with Vitis vinifera and other distant dicotyledonous sequenced genomes.BMC plant biology · 2009Article
- Synteny of Prunus and other model plant species.BMC genomics · 2009Article
- Dissection of the oligogenic resistance to Cucumber mosaic virus in the melon accession PI 161375.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2009Article
- Bin mapping of genomic and EST-derived SSRs in melon (Cucumis melo L.).TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2008Article
- Characterization of hemizygous deletions in citrus using array-comparative genomic hybridization and microsynteny comparisons with the poplar genome.BMC genomics · 2008Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
7 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
In this study, two melon bacterial artificial chromosome (BAC) clones have been sequenced and annotated. BAC 1-21-10 spans 92 kb and contains the nsv locus conferring resistance to the Melon Necrotic Spot Virus (MNSV) in melon linkage group 11. BAC 13J4 spans 98 kb and belongs to a BAC contig containing resistance gene homologues, extending a previous sequenced region of 117 kb in linkage group 4. Both regions have microsyntenic relationships to the model plant species Arabidopsis thaliana, and to Medicago truncatula and Populus trichocarpa. The network of synteny found between melon and each of the sequenced genomes reflects the polyploid structure of Arabidopsis, Populus, and Medicago genomes due to whole genome duplications (WGD). A detailed analysis revealed that both melon regions have a lower relative syntenic quality with Arabidopsis (eurosid II) than when compared to Populus and Medicago (eurosid I). Although phylogenetically Cucurbitales seem to be closer to Fabales than to Malphigiales, synteny was higher between both melon regions and Populus. Presented data imply that the recently completed Populus genome sequence could preferentially be used to obtain positional information in melon, based on microsynteny.
Indexed as
Identifiers
17665215What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.