Evidence map›Paper›PMID 17664295›Full record

ArticleThe Journal of experimental medicine2007

A/T mutagenesis in hypermutated immunoglobulin genes strongly depends on PCNAK164 modification.

Petra Langerak, Anders O H Nygren, Peter H L Krijger, Paul C M van den Berk, Heinz Jacobs

Open access · greenAbstract read
In one paragraph

Article in The Journal of experimental medicine, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 86 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
86citing papers in PubMed, 1 pooled it
4.8field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

86 citing papers in PubMed, 1 synthesis or guideline pooled it, 154 citations in OpenAlex.

  1. Pooled it
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  17. Tandem Substitutions in Somatic Hypermutation.Frontiers in immunology · 2021
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26 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

Petra LangerakThe Netherlands Cancer Institute, 1066 CX Amsterdam, The Netherlands.
Anders O H Nygren
Peter H L Krijger
Paul C M van den Berk
Heinz Jacobs
The Netherlands Cancer Institute · NLMRC Holland (Netherlands) · NLOncode Institute · NL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

B cells use translesion DNA synthesis (TLS) to introduce somatic mutations around genetic lesions caused by activation-induced cytidine deaminase. Monoubiquitination at lysine(164) of proliferating cell nuclear antigen (PCNA(K164)) stimulates TLS. To determine the role of PCNA(K164) modifications in somatic hypermutation, PCNA(K164R) knock-in mice were generated. PCNA(K164R/K164R) mutants are born at a sub-Mendelian frequency. Although PCNA(K164R/K164R) B cells proliferate and class switch normally, the mutation spectrum of hypermutated immunoglobulin (Ig) genes alters dramatically. A strong reduction of mutations at template A/T is associated with a compensatory increase at G/C, which is a phenotype similar to polymerase eta (Poleta) and mismatch repair-deficient B cells. Mismatch recognition, monoubiquitinated PCNA, and Poleta likely cooperate in establishing mutations at template A/T during replication of Ig genes.

Indexed as

Gene Expression RegulationMutagenesisMutationAdenineAnimalsB-LymphocytesCell ProliferationCytosineDNA-Directed DNA PolymeraseHomozygoteImmunoglobulinsMiceModels, BiologicalPhenotypeProliferating Cell Nuclear AntigenUbiquitinAdenineCytosineDNA-Directed DNA PolymeraseDNA polymerase muImmunoglobulinsProliferating Cell Nuclear AntigenUbiquitin

Identifiers

PMID17664295
PMCPMC2118671
OpenAlexW2142538175

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.