Evidence map›Paper›PMID 17660203›Full record

ArticleBioinformatics (Oxford, England)2007

BLISS 2.0: a web-based tool for predicting conserved regulatory modules in distantly-related orthologous sequences.

Hailong Meng, Arunava Banerjee, Lei Zhou

Abstract read
In one paragraph

Article in Bioinformatics (Oxford, England), 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Hailong MengDepartment of Computer and Information Science, College of Engineering, UFL, Gainesville, FL 32611, USA.
Arunava Banerjee
Lei Zhou

Funding

Probing Complexity of UV Induced Apoptosis in DrosophilaR01CA095542 · NCI · UNIVERSITY OF FLORIDA · PI ZHOU, LEI · 2003 to 2007
$1.2M
Comparative Analysis of Cell Death Regulation in MosquitoesR21AI067555 · NIAID · UNIVERSITY OF FLORIDA · PI ZHOU, LEI · 2006 to 2007
$394k
NCI NIH HHS CA095542NCI NIH HHS R01 CA095542NIAID NIH HHS AI067555NIAID NIH HHS R21 AI067555
6 · The paper itself

Abstract

unlabelledBLISS 2.0 is a web-based application for identifying conserved regulatory modules in distantly related orthologous sequences. Unlike existing approaches, it performs the cross-genome comparison at the binding site level. Experimental results on simulated and real world data indicate that BLISS 2.0 can identify conserved regulatory modules from sequences with little overall similarity at the DNA sequence level. AVAILABILITY: http://www.blisstool.org/

Indexed as

AlgorithmsInternetSoftwareBase SequenceBinding SitesConserved SequenceEvolution, MolecularMolecular Sequence DataProtein BindingRegulatory Elements, TranscriptionalSequence AlignmentSequence Analysis, DNATranscription FactorsTranscription Factors

Identifiers

PMID17660203
PMCPMC2584781

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.