Evidence map›Paper›PMID 17652709›Full record

ArticleInvestigative ophthalmology & visual science2007

Form-deprivation myopia in chick induces limited changes in retinal gene expression.

Alice M McGlinn, Donald A Baldwin, John W Tobias, Murat T Budak, Tejvir S Khurana, Richard A Stone

Open access · greenAbstract read
In one paragraph

Article in Investigative ophthalmology & visual science, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 48 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
48citing papers in PubMed, 2 pooled it
3.2field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

48 citing papers in PubMed, 2 syntheses or guidelines pooled it, 80 citations in OpenAlex.

  1. Pooled it
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  10. The Role of Retinal Dysfunction in Myopia Development.Cellular and molecular neurobiology · 2023
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Alice M McGlinnDepartment of Ophthalmology, Scheie Eye Institute, University of Pennsylvania School of Medicine, Philadelphia, Pennsylvania 19104-6075, USA.
Donald A Baldwin
John W Tobias
Murat T Budak
Tejvir S Khurana
Richard A Stone
Czech Academy of Sciences, Institute of Physiology · CZPenn Presbyterian Medical Center · US

Funding

Molecular Characterization of Extraocular Muscle (EOM)R01EY013862 · NEI · UNIVERSITY OF PENNSYLVANIA · PI KHURANA, TEJVIR S · 2004 to 2010
$2.8M
mRNA expression by RPE cells in myopiaR21EY015760 · NEI · UNIVERSITY OF PENNSYLVANIA · PI STONE, RICHARD ALAN · 2005 to 2006
$431k
NEI NIH HHS R01 EY013862NEI NIH HHS R01-EY013862NEI NIH HHS R21 EY015760NEI NIH HHS R21-EY015760
6 · The paper itself

Abstract

purposeEvidence has implicated the retina as a principal controller of refractive development. In the present study, the retinal transcriptome was analyzed to identify alterations in gene expression and potential signaling pathways involved in form-deprivation myopia of the chick.

methodsOne-week-old white Leghorn chicks wore a unilateral image-degrading goggle for 6 hours or 3 days (n = 6 at each time). Total RNA from the retina/(retinal pigment epithelium) was used for expression profiling with chicken gene microarrays (Chicken GeneChips; Affymetrix, Santa Clara, CA). To identify gene expression level differences between goggled and contralateral nongoggled eyes, normalized microarray signal intensities were analyzed by the significance analysis of microarrays (SAM) approach. Differentially expressed genes were validated by real-time quantitative reverse transcription-polymerase chain reaction (qPCR) in independent biological replicates.

resultsSmall changes were detected in differentially expressed genes in form-deprived eyes. In chickens that had 6 hours of goggle wear, downregulation of bone morphogenetic protein 2 and connective tissue growth factor was validated. In those with 3 days of goggle wear, downregulation of bone morphogenetic protein 2, vasoactive intestinal peptide, preopro-urotensin II-related peptide and mitogen-activated protein kinase phosphatase 2 was validated, and upregulation of endothelin receptor type B and interleukin-18 was validated.

conclusionsForm-deprivation myopia, in its early stages, is associated with only minimal changes in retinal gene expression at the level of the transcriptome. While the list of validated genes is short, each merits further study for potential involvement in the signaling cascade mediating myopia development.

Indexed as

Gene Expression Regulation, DevelopmentalAge FactorsAnimalsChickensEye Protective DevicesForm PerceptionGenomicsMyopiaOligonucleotide Array Sequence AnalysisPerceptual DistortionRetinaSignal Transduction

Identifiers

PMID17652709
PMCPMC1983368
OpenAlexW2039964960

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.