Evidence map›Paper›PMID 17652391›Full record

ArticleJournal of virology2007

Vpr is required for efficient Nef expression from unintegrated human immunodeficiency virus type 1 DNA.

Betty Poon, Michael A Chang, Irvin S Y Chen

Open access · greenAbstract read
In one paragraph

Article in Journal of virology, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed, 1 pooled it
1.0field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed, 1 synthesis or guideline pooled it, 42 citations in OpenAlex.

  1. HIV Genome-Wide Protein Associations: a Review of 30 Years of Research.Microbiology and molecular biology reviews : MMBR · 2016
    Pooled it
  2. Review
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  8. CHAF1A/B mediate silencing of unintegrated HIV-1 DNAs early in infection.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Betty PoonDepartment of Microbiology, Immunology and Molecular Genetics, David Geffen School of Medicine at UCLA, UCLA AIDS Institute and Jonsson Comprehensive CAncer Center, 11-934 Factor Building, 10833 Le Conte Avenue, Los Angeles, CA 90095-1678, USA.
Michael A Chang
Irvin S Y Chen
UCLA Jonsson Comprehensive Cancer Center

Funding

Virology CoreP30AI028697 · NIAID · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI ANTON, PETER A · 1991 to 2018
$39.9M
STRUCTURE/FUNCTION OF HIV1 VPR ASSOCIATED CELL PROTEINSR01AI043190 · NIAID · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI CHEN, IRVIN S.Y. · 1998 to 2005
$2.5M
HIV 1 VPR INDUCES G2 CELL CYCLE ARREST AND APOPTOSISR01CA070018 · NCI · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI CHEN, IRVIN S.Y. · 1995 to 2007
$2.5M
NCI NIH HHS CA70018NCI NIH HHS R01 CA070018NIAID NIH HHS AI28697NIAID NIH HHS AI43190NIAID NIH HHS P30 AI028697NIAID NIH HHS R01 AI043190
6 · The paper itself

Abstract

Unintegrated human immunodeficiency virus (HIV) DNA are viral DNA products formed naturally during HIV replication. While the integrated proviral DNA form is transcriptionally active and results in productive infection, unintegrated DNA is also capable of expression of viral RNA and proteins. Previously, we showed that HIV Vpr enhances expression from integrase-defective HIV. Here we show that Vpr activation of expression is partially dependent upon the presence of a transcriptionally active HIV promoter and results in increased transcription of unspliced gag and spliced nef viral RNA. While Tat is detectable during infection with integrase-defective HIV, Tat levels are not affected by the presence of Vpr. Mutation studies reveal that Tat is dispensable for the Vpr-mediated enhancement of expression from unintegrated DNA. We find that virion-associated Vpr is sufficient for Nef expression from unintegrated viral DNA, resulting in the efficient downregulation of CD4 from the surface of infected cells. These results provide a mechanism by which Nef expression from unintegrated HIV type 1 DNA expression occurs.

Indexed as

Gene Expression Regulation, ViralCD4 AntigensCell LineDNA, ViralDown-RegulationGene Products, nefGene Products, tatGene Products, vprHIV-1HumansMutationnef Gene Products, Human Immunodeficiency VirusPromoter Regions, Genetictat Gene Products, Human Immunodeficiency VirusTranscriptional ActivationTranscription, GeneticCD4 AntigensDNA, ViralGene Products, nefGene Products, tatGene Products, vprnef Gene Products, Human Immunodeficiency Virustat Gene Products, Human Immunodeficiency Virusvpr Gene Products, Human Immunodeficiency Virus

Identifiers

PMID17652391
PMCPMC2045493
OpenAlexW2160282023

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.