Evidence map›Paper›PMID 17652169›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2007

Identification of a chloride ion binding site in Na+/Cl -dependent transporters.

Lucy R Forrest, Sotiria Tavoulari, Yuan-Wei Zhang, Gary Rudnick, Barry Honig

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 125 papers.

0numbers the graph read from it
0cells of the map it votes in
125citing papers in PubMed
8.4field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

125 citing papers in PubMed, 200 citations in OpenAlex.

  1. Trial
  2. Article
  3. Article
  4. Molecular basis for substrate recognition and transport of mammalian taurine transporters.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  5. Review
  6. Article
  7. Identification of the potassium-binding site in serotonin transporter.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  8. Exploring the KeLife · 2024
    Article
  9. Article
  10. Article
  11. Review
  12. The "www" ofMembranes · 2022
    Review
  13. Article
  14. Two Lignan Glycosides fromPharmaceuticals (Basel, Switzerland) · 2022
    Article
  15. Article
  16. Article
  17. Review
  18. Review
  19. Article
  20. Article

65 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Lucy R ForrestHoward Hughes Medical Institute, Center for Computational Biology and Bioinformatics, and Department of Biochemistry and Molecular Biophysics, Columbia University, 1130 St. Nicholas Avenue, Room 815, New York, NY 10032, USA.
Sotiria Tavoulari
Yuan-Wei Zhang
Gary Rudnick
Barry Honig
Yale University · USColumbia University · US

Funding

NEUROTRANSMITTER TRANSPORTR01DA008213 · NIDA · YALE UNIVERSITY · PI RUDNICK, GARY W · 1993 to 2014
$3.5M
TRAINING IN PHARMACOLOGY OF DRUG ABUSET32DA007295 · NIDA · UNIVERSITY OF ARIZONA · PI PORRECA, FRANK · 1996 to 2000
$236k
NIDA NIH HHS DA 007295NIDA NIH HHS R01 DA008213NIDA NIH HHS T32 DA007295
6 · The paper itself

Abstract

The recent determination of the crystal structure of the leucine transporter from Aquifex aeolicus (aaLeuT) has provided significant insights into the function of neurotransmitter:sodium symporters. Transport by aaLeuT is Cl(-) independent, whereas many neurotransmitter:sodium symporters from higher organisms depend on Cl(-) ions. However, the only Cl(-) ion identified in the aaLeuT structure interacts with nonconserved residues in extracellular loops, and thus the relevance of this binding site is unclear. Here, we use calculations of pK(A)s and homology modeling to predict the location of a functionally important Cl(-) binding site in serotonin transporter and other Cl(-)-dependent transporters. We validate our model through the site-directed mutagenesis of residues predicted to coordinate the Cl(-) ion and through the observation of sequence conservation patterns in other Cl(-)-dependent transporters. The proposed site is located midway across the membrane and is formed by residues from transmembrane helices 2, 6, and 7. It is close to the Na1 sodium binding site, thus providing an explanation for the coupling of Cl(-) and Na(+) ions during transport. Other implications of the model are also discussed.

Indexed as

Amino Acid SequenceAmino Acid Transport Systems, BasicBacterial ProteinsBinding SitesChloridesHumansIonsMembrane Transport ProteinsModels, MolecularMolecular Sequence DataMutationPlasma Membrane Neurotransmitter Transport ProteinsProtein Structure, TertiaryProtonsAmino Acid Transport Systems, BasicBacterial ProteinsChloridescif nucleoside transporterIonsMembrane Transport ProteinsPlasma Membrane Neurotransmitter Transport ProteinsProtons

Identifiers

PMID17652169
PMCPMC1937540
OpenAlexW2077531668

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.