Evidence map›Paper›PMID 17651496›Full record

ArticleGenome biology2007

Co-localization of CENP-C and CENP-H to discontinuous domains of CENP-A chromatin at human neocentromeres.

Alicia Alonso, Björn Fritz, Dan Hasson, György Abrusan, Fanny Cheung, Kinya Yoda, Bernhard Radlwimmer, Andreas G Ladurner, Peter E Warburton

Open access · goldAbstract read
In one paragraph

Article in Genome biology, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 51 papers.

0numbers the graph read from it
0cells of the map it votes in
51citing papers in PubMed
14.7field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

51 citing papers in PubMed, 81 citations in OpenAlex.

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  6. Review
  7. Case Report: Prenatal Identification of aFrontiers in genetics · 2022
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  13. Review
  14. Transposable elements: genome innovation, chromosome diversity, and centromere conflict.Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 2018
    Review
  15. Review
  16. Article
  17. Article
  18. Human centromere repositioning within euchromatin after partial chromosome deletion.Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 2016
    Article
  19. Genetic and epigenetic regulation of centromeres: a look at HAC formation.Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 2015
    Review
  20. DNA content of a functioning chicken kinetochore.Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 2014
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 3 countries.

Alicia AlonsoDepartment of Genetics and Genomic Sciences, Mount Sinai School of Medicine, 1425 Madison Avenue, New York, New York 10029, USA.
Björn Fritz
Dan Hasson
György Abrusan
Fanny Cheung
Kinya Yoda
Bernhard Radlwimmer
Andreas G Ladurner
Peter E Warburton
Icahn School of Medicine at Mount Sinai · USEuropean Molecular Biology Laboratory · DEDKFZ-ZMBH Alliance · DENagoya University · JP

Funding

ANALYSIS OF HUMAN CHROMOSOME 13Q NEOCENTROMERE FORMATIONR01GM061150 · NIGMS · MOUNT SINAI SCHOOL OF MEDICINE OF NYU · PI WARBURTON, PETER E · 2000 to 2007
$1.7M
A 13q32 BAC Microarray for chromosome function analysisR21HG002919 · NHGRI · MOUNT SINAI SCHOOL OF MEDICINE OF NYU · PI WARBURTON, PETER E · 2003 to 2004
$339k
NHGRI NIH HHS R21 HG002919NHGRI NIH HHS R21 HG02919NIGMS NIH HHS R01 GM061150
6 · The paper itself

Abstract

backgroundMammalian centromere formation is dependent on chromatin that contains centromere protein (CENP)-A, which is the centromere-specific histone H3 variant. Human neocentromeres have acquired CENP-A chromatin epigenetically in ectopic chromosomal locations on low-copy complex DNA. Neocentromeres permit detailed investigation of centromeric chromatin organization that is not possible in the highly repetitive alpha satellite DNA present at endogenous centromeres.

resultsWe have examined the distribution of CENP-A, as well as two additional centromeric chromatin-associated proteins (CENP-C and CENP-H), across neocentromeric DNA using chromatin immunoprecipitation (ChIP) on CHIP assays on custom genomic microarrays at three different resolutions. Analysis of two neocentromeres using a contiguous bacterial artificial chromosome (BAC) microarray spanning bands 13q31.3 to 13q33.1 shows that both CENP-C and CENP-H co-localize to the CENP-A chromatin domain. Using a higher resolution polymerase chain reaction (PCR)-amplicon microarray spanning the neocentromere, we find that the CENP-A chromatin is discontinuous, consisting of a major domain of about 87.8 kilobases (kb) and a minor domain of about 13.2 kb, separated by an approximately 158 kb region devoid of CENPs. Both CENP-A domains exhibit co-localization of CENP-C and CENP-H, defining a distinct inner kinetochore chromatin structure that is consistent with higher order chromatin looping models at centromeres. The PCR microarray data suggested varying density of CENP-A nucleosomes across the major domain, which was confirmed using a higher resolution oligo-based microarray.

conclusionCentromeric chromatin consists of several CENP-A subdomains with highly discontinuous CENP-A chromatin at both the level of individual nucleosomes and at higher order chromatin levels, raising questions regarding the overall structure of centromeric chromatin.

Indexed as

AutoantigensBase SequenceCentromereCentromere Protein AChromatinChromatin ImmunoprecipitationChromosomal Proteins, Non-HistoneChromosomes, Human, Pair 13HumansNucleosomesSequence Analysis, DNAAutoantigensCENPA protein, humanCENPH protein, humanCentromere Protein Acentromere protein CChromatinChromosomal Proteins, Non-HistoneNucleosomes

Identifiers

PMID17651496
PMCPMC2323242
OpenAlexW2104877081

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.