ArticleBMC genomics2007
TrED: the Trichophyton rubrum Expression Database.
Article in BMC genomics, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.
What it found
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
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Who cites it
12 citing papers in PubMed, 33 citations in OpenAlex.
- Online Databases for Taxonomy and Identification of Pathogenic Fungi and Proposal for a Cloud-Based Dynamic Data Network Platform.Journal of clinical microbiology · 2017Review
- Comparison of the in vitro activities of newer triazoles and established antifungal agents against Trichophyton rubrum.Antimicrobial agents and chemotherapy · 2015Article
- Identification of differently expressed genes with specific SNP Loci for breast cancer by the integration of SNP and gene expression profiling analyses.Pathology oncology research : POR · 2015Article
- Tools for visualization and analysis of molecular networks, pathways, and -omics data.Advances and applications in bioinformatics and chemistry : AABC · 2015Review
- Analysis of gene expression changes in Trichophyton rubrum after skin interaction.Journal of medical microbiology · 2014Article
- Identification and characterisation of non-coding small RNAs in the pathogenic filamentous fungus Trichophyton rubrum.BMC genomics · 2013Article
- Dermatophyte virulence factors: identifying and analyzing genes that may contribute to chronic or acute skin infections.International journal of microbiology · 2012Article
- Transcriptional profiling reveals the expression of novel genes in response to various stimuli in the human dermatophyte Trichophyton rubrum.BMC microbiology · 2010Article
- Development of transformation system for Trichophyton rubrum by electroporation of germinated conidia.Current genetics · 2009Article
- Recent dermatophyte divergence revealed by comparative and phylogenetic analysis of mitochondrial genomes.BMC genomics · 2009Article
- Generating and testing molecular hypotheses in the dermatophytes.Eukaryotic cell · 2008Review
- Proteomic profile of dormant Trichophyton rubrum conidia.BMC genomics · 2008Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
6 authors at 2 institutions in 1 country.
Funding
Abstract
backgroundTrichophyton rubrum is the most common dermatophyte species and the most frequent cause of fungal skin infections in humans worldwide. It's a major concern because feet and nail infections caused by this organism is extremely difficult to cure. A large set of expression data including expressed sequence tags (ESTs) and transcriptional profiles of this important fungal pathogen are now available. Careful analysis of these data can give valuable information about potential virulence factors, antigens and novel metabolic pathways. We intend to create an integrated database TrED to facilitate the study of dermatophytes, and enhance the development of effective diagnostic and treatment strategies. DESCRIPTION: All publicly available ESTs and expression profiles of T. rubrum during conidial germination in time-course experiments and challenged with antifungal agents are deposited in the database. In addition, comparative genomics hybridization results of 22 dermatophytic fungi strains from three genera, Trichophyton, Microsporum and Epidermophyton, are also included. ESTs are clustered and assembled to elongate the sequence length and abate redundancy. TrED provides functional analysis based on GenBank, Pfam, and KOG databases, along with KEGG pathway and GO vocabulary. It is integrated with a suite of custom web-based tools that facilitate querying and retrieving various EST properties, visualization and comparison of transcriptional profiles, and sequence-similarity searching by BLAST.
conclusionTrED is built upon a relational database, with a web interface offering analytic functions, to provide integrated access to various expression data of T. rubrum and comparative results of dermatophytes. It is devoted to be a comprehensive resource and platform to assist functional genomic studies in dermatophytes. TrED is available from URL: http://www.mgc.ac.cn/TrED/.
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What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.