Evidence map›Paper›PMID 17640888›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2007

Fiber-dependent amyloid formation as catalysis of an existing reaction pathway.

Amy M Ruschak, Andrew D Miranker

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 94 papers.

0numbers the graph read from it
0cells of the map it votes in
94citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

94 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Review
  6. Review
  7. Article
  8. Review
  9. Self-replication of AProceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  10. Review
  11. Article
  12. Review
  13. Chiral Selectivity of Secondary Nucleation in Amyloid Fibril Propagation.Angewandte Chemie (International ed. in English) · 2021
    Article
  14. Single Molecule Characterization of Amyloid Oligomers.Molecules (Basel, Switzerland) · 2021
    Review
  15. Review
  16. Article
  17. Review
  18. Article
  19. Thermodynamic and kinetic design principles for amyloid-aggregation inhibitors.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  20. Review

34 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Amy M RuschakDepartment of Chemistry, Yale University, 260 Whitney Avenue, New Haven, CT 06520-8114, USA.
Andrew D Miranker

Funding

MOLECULAR BASIS OF FIBRIL FORMATION IN ISLET AMYLOIDR01DK054899 · NIDDK · YALE UNIVERSITY · PI MIRANKER, ANDREW D. · 1999 to 2007
$1.9M
Fibrillogenesis pathways in diabetes and renal diseasesR56DK054899 · NIDDK · YALE UNIVERSITY · PI MIRANKER, ANDREW D. · 2008 to 2008
$136k
NIDDK NIH HHS DK54899NIDDK NIH HHS R01 DK054899NIDDK NIH HHS R56 DK054899
6 · The paper itself

Abstract

A central component of a number of degenerative diseases is the deposition of protein as amyloid fibers. Self-assembly of amyloid occurs by a nucleation-dependent mechanism that gives rise to a characteristic sigmoidal reaction profile. The abruptness of this transition is a variable characteristic of different proteins with implications to both chemical mechanism and the aggressiveness of disease. Because nucleation is defined as the rate-limiting step, we have sought to determine the nature of this step for a model system derived from islet amyloid polypeptide. We show that nucleation occurs by two pathways: a fiber-independent (primary) pathway and a fiber-dependent (secondary) pathway. We first show that the balance between primary and secondary contributions can be manipulated by an external interface. Specifically, in the presence of this interface, the primary mechanism dominates, whereas in its absence, the secondary mechanism dominates. Intriguingly, we determine that both the reaction order and the enthalpy of activation of the two nucleation processes are identical. We interrogate this coincidence by global analysis using a simplified model generally applicable to protein polymerization. A physically reasonable set of parameters can be found to satisfy the coincidence. We conclude that primary and secondary nucleation need not represent different processes for amyloid formation. Rather, they are alternative manifestations of the same, surface-catalyzed nucleation event.

Indexed as

AmyloidCatalysisIslet Amyloid PolypeptideMicroscopy, Electron, TransmissionPeptide FragmentsTemperatureAmyloidIAPP(20-29) peptideIslet Amyloid PolypeptidePeptide Fragments

Identifiers

PMID17640888
PMCPMC1941471

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.