Evidence map›Paper›PMID 17639083›Full record

ArticleGenes & development2007

The multifunctional protein p54nrb/PSF recruits the exonuclease XRN2 to facilitate pre-mRNA 3' processing and transcription termination.

Syuzo Kaneko, Orit Rozenblatt-Rosen, Matthew Meyerson, James L Manley

Open access · diamondAbstract read
In one paragraph

Article in Genes & development, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 122 papers.

0numbers the graph read from it
0cells of the map it votes in
122citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

122 citing papers in PubMed, 175 citations in OpenAlex.

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  13. Frontiers in molecular biosciences · 2022
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  20. NONO and tumorigenesis: More than splicing.Journal of cellular and molecular medicine · 2020
    Review

62 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Syuzo KanekoDepartment of Biological Sciences, Columbia University, New York, New York 10027, USA.
Orit Rozenblatt-Rosen
Matthew Meyerson
James L Manley
Columbia University · USDana-Farber Cancer Institute · US

Funding

MRNA SYTHESIS IN ANIMAL CELLS--3END FORMATIONR01GM028983 · NIGMS · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI MANLEY, JAMES L. · 1985 to 2014
$6.4M
NIGMS NIH HHS GM28983NIGMS NIH HHS R01 GM028983
6 · The paper itself

Abstract

Termination of RNA polymerase II transcription frequently requires a poly(A) signal and cleavage/polyadenylation factors. Recent work has shown that degradation of the downstream cleaved RNA by the exonuclease XRN2 promotes termination, but how XRN2 functions with 3'-processing factors to elicit termination remains unclear. Here we show that XRN2 physically associates with 3'-processing factors and accumulates at the 3' end of a transcribed gene. In vitro 3'-processing assays show that XRN2 is necessary to degrade the downstream RNA, but is not required for 3' cleavage. Significantly, degradation of the 3'-cleaved RNA was stimulated when coupled to cleavage. Unexpectedly, while investigating how XRN2 is recruited to the 3'-processing machinery, we found that XRN2 associates with p54nrb/NonO(p54)-protein-associated splicing factor (PSF), multifunctional proteins involved in several nuclear processes. Strikingly, p54 is also required for degradation of the 3'-cleaved RNA in vitro. p54 is present along the length of genes, and small interfering RNA (siRNA)-mediated knockdown leads to defects in XRN2 recruitment and termination. Together, our data indicate that p54nrb/PSF functions in recruitment of XRN2 to facilitate pre-mRNA 3' processing and transcription termination.

Indexed as

RNA Processing, Post-TranscriptionalBase SequenceDNA-Binding ProteinsExoribonucleasesHeLa CellsHumansNuclear Matrix-Associated ProteinsOctamer Transcription FactorsPTB-Associated Splicing FactorRecombinant Fusion ProteinsRNA-Binding ProteinsRNA InterferenceRNA PrecursorsRNA, Small InterferingTranscription, GeneticDNA-Binding ProteinsExoribonucleasesNONO protein, humanNuclear Matrix-Associated ProteinsOctamer Transcription FactorsPTB-Associated Splicing FactorRecombinant Fusion ProteinsRNA-Binding ProteinsRNA PrecursorsRNA, Small InterferingXRN2 protein, human

Identifiers

PMID17639083
PMCPMC1920172
OpenAlexW2140970597

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.