Evidence map›Paper›PMID 17636889›Full record

ReviewChemical reviews2007

Comparative genomic reconstruction of transcriptional regulatory networks in bacteria.

Dmitry A Rodionov

Open access · greenAbstract readComparative StudyReview
In one paragraph

Review in Chemical reviews, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 140 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
140citing papers in PubMed, 1 pooled it
8.0field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

140 citing papers in PubMed, 1 synthesis or guideline pooled it, 220 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Review
  4. Article
  5. Article
  6. Tungsten is utilized for lactate consumption and SCFA production by a dominant human gut microbeProceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  7. Review
  8. Article
  9. Article
  10. Vitamin BThe ISME journal · 2023
    Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. The gene regulatory network ofFrontiers in microbiology · 2022
    Article
  17. Article
  18. Article
  19. Article
  20. Microorganisms · 2021
    Article

80 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

1 author at 1 institution in 2 countries.

Dmitry A RodionovBurnham Institute for Medical Research, La Jolla, California 92037, USA. rodionov@burnham.org
Institute for Information Transmission Problems · RU

Funding

Genomics of Coenzyme Metabolism in Bacterial PathogensR01AI066244 · NIAID · SANFORD BURNHAM PREBYS MEDICAL DISCOVERY INSTITUTE · PI OSTERMAN, ANDREI L · 2007 to 2010
$1.6M
NIAID NIH HHS 1R01AI066244-01A2NIAID NIH HHS R01 AI066244
6 · The paper itself

Abstract

PubMed holds no abstract for this paper.

Indexed as

GenomicsBacteriaComputational BiologyDatabases, GeneticGene Regulatory NetworksGenome, Bacterial

Identifiers

PMID17636889
PMCPMC2643304
OpenAlexW1999309464

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.