Evidence map›Paper›PMID 17636870›Full record

ArticleBiochemistry2007

Relevance of partially structured states in the non-classical secretion of acidic fibroblast growth factor.

Dakshinamurthy Rajalingam, Irene Graziani, Igor Prudovsky, Chin Yu, Thallapuranam Krishnaswamy S Kumar

Abstract read
In one paragraph

Article in Biochemistry, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
1.3field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 19 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Candida albicans cell wall proteins.Microbiology and molecular biology reviews : MMBR · 2008
    Review
  7. Secretion without Golgi.Journal of cellular biochemistry · 2008
    Review
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 2 countries.

Dakshinamurthy RajalingamDepartment of Chemistry and Biochemistry, University of Arkansas, Fayetteville, Arkansas 72701, USA.
Irene Graziani
Igor Prudovsky
Chin Yu
Thallapuranam Krishnaswamy S Kumar
Maine Medical Center Research Institute · USNational Tsing Hua University · TW

Funding

Structure based drug discoveryP20RR015569 · NCRR · UNIVERSITY OF ARKANSAS AT FAYETTEVILLE · PI MILLETT, FRANCIS S · 2000 to 2009
$21.4M
Transcriptional Decisions in Endothelial Cell DifferentiationP20RR015555 · NCRR · MAINE MEDICAL CENTER · PI PRUDOVSKY, IGOR · 2000 to 2009
$21.4M
THE PATHOLOGY OF HUMAN ENDOTHELIAL CELL PHENOTYPESR01HL035627 · NHLBI · MELOY LABORATORIES, INC. · PI PRUDOVSKY, IGOR · 1985 to 2010
$2.3M
GROWTH FACTOR SIGNALING AND TRAFFIC IN ANGIOGENESISR01HL032348 · NHLBI · MELOY LABORATORIES, INC. · PI PRUDOVSKY, IGOR · 1985 to 2005
$1.6M
NCRR NIH HHS P20 RR015555NCRR NIH HHS P20 RR015569NCRR NIH HHS P20RR15569NCRR NIH HHS RR15555NHLBI NIH HHS HL32348NHLBI NIH HHS HL35627NHLBI NIH HHS R01 HL032348NHLBI NIH HHS R01 HL035627
6 · The paper itself

Abstract

Acidic fibroblast growth factor (aFGF) is a signal peptide-less protein that is secreted into the extracellular compartment as part of a multiprotein release complex, consisting of aFGF, S100A13 (a calcium binding protein), and a 40 kDa (p40) form of synaptotagmin (Syt1), a protein that participates in the docking of a variety of secretory vesicles. p40 Syt1, and specifically its C2A domain, is believed to play a major role in the non-classical secretion of the aFGF release complex mediated by the interaction of aFGF and p40 Syt1with the phospholipids of the cell membrane inner leaflet. In the present study, we investigate the structural characteristics of aFGF and the C2A domain of p40 Syt1 under acidic conditions, using a variety of biophysical techniques including multidimensional NMR spectroscopy. Urea-induced equilibrium unfolding (at pH 3.4) of both aFGF and the C2A domain are non-cooperative and proceed with the accumulation of stable intermediate states. 1-Anilino-8-napthalene sulfonate (ANS) binding and size-exclusion chromatography results suggest that both aFGF and the C2A domain exist as partially structured states under acidic conditions (pH 3.4). Limited trypsin digestion analysis and 1H-15N chemical shift perturbation data reveal that the flexibility of certain portions of the protein backbone is increased in the partially structured state(s) of aFGF. The residues that are perturbed in the partially structured state(s) in aFGF are mostly located at the N- and C-terminal ends of the protein. In marked contrast, most of the interactions stabilizing the native secondary structure are preserved in the partially structured state of the C2A domain. Isothermal titration calorimetry data indicate that the binding affinity between aFGF and the C2A domain is significantly enhanced at pH 3.4. In addition, both aFGF and the C2A domain exhibit much higher lipid binding affinity in their partially structured states. The translocation of the multiprotein FGF release complex across the membrane appears to be facilitated by the formation of partially structured states of aFGF and the C2A domain of p40 Syt1.

Indexed as

Fibroblast Growth Factor 1Hydrogen-Ion ConcentrationLiposomesMultiprotein ComplexesPhosphatidylserinesProtein BindingProtein FoldingProtein Structure, TertiaryProtein TransportSynaptotagmin IUreaFibroblast Growth Factor 1LiposomesMultiprotein ComplexesPhosphatidylserinesSynaptotagmin IUrea

Identifiers

PMID17636870
PMCPMC3656169
OpenAlexW1982846575

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.