Evidence map›Paper›PMID 17632514›Full record

ArticleNature chemical biology2007

Unusual transformations in the biosynthesis of the antibiotic phosphinothricin tripeptide.

Joshua A V Blodgett, Paul M Thomas, Gongyong Li, Juan E Velasquez, Wilfred A van der Donk, Neil L Kelleher, William W Metcalf

Abstract read
In one paragraph

Article in Nature chemical biology, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 91 papers.

0numbers the graph read from it
0cells of the map it votes in
91citing papers in PubMed
5.3field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

91 citing papers in PubMed, 142 citations in OpenAlex.

  1. Late-Stage Posttranslational Assembly of Fosfazinomycins.bioRxiv : the preprint server for biology · 2026
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  10. Laboratory evolution inApplied and environmental microbiology · 2025
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  14. Article
  15. Glyphosate-Induced Phosphonatase Operons in Soil Bacteria of the GenusInternational journal of molecular sciences · 2024
    Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article

31 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Joshua A V BlodgettDepartment of Microbiology, University of Illinois at Urbana-Champaign, B103 CLSL, 601 S. Goodwin, Urbana, Illinois 61801, USA.
Paul M Thomas
Gongyong Li
Juan E Velasquez
Wilfred A van der Donk
Neil L Kelleher
William W Metcalf
University of Illinois Urbana-Champaign · US

Funding

Structural Elucidation and Biosynthesis P01GM077596 · NIGMS · UNIVERSITY OF ILLINOIS AT URBANA-CHAMPAIGN · PI METCALF, WILLIAM W · 2007 to 2016
$15.3M
Training Program in Chemistry-Interface with BiologyT32GM070421 · NIGMS · UNIVERSITY OF ILLINOIS URBANA-CHAMPAIGN · PI HERGENROTHER, PAUL · 2005 to 2019
$5.4M
Mass Spectrometric Studies of Thiotemplate BiosynthesisR01GM067725 · NIGMS · UNIVERSITY OF ILLINOIS URBANA-CHAMPAIGN · PI KELLEHER, NEIL L · 2003 to 2013
$3.0M
MICROBIAL METABOLISMS OF REDUCED PHOSPHOROUS COMPOUNDSR01GM059334 · NIGMS · UNIVERSITY OF ILLINOIS URBANA-CHAMPAIGN · PI METCALF, WILLIAM W · 1999 to 2008
$1.9M
NIGMS NIH HHS 5T32 GM070421NIGMS NIH HHS GM067725NIGMS NIH HHS GM59334NIGMS NIH HHS P01 GM077596NIGMS NIH HHS R01 GM059334NIGMS NIH HHS R01 GM067725NIGMS NIH HHS T32 GM070421
6 · The paper itself

Abstract

Phosphinothricin tripeptide (PTT, phosphinothricylalanylalanine) is a natural-product antibiotic and potent herbicide that is produced by Streptomyces hygroscopicus ATCC 21705 (ref. 1) and Streptomyces viridochromogenes DSM 40736 (ref. 2). PTT has attracted widespread interest because of its commercial applications and unique phosphinic acid functional group. Despite intensive study since its discovery in 1972 (see ref. 3 for a comprehensive review), a number of steps early in the PTT biosynthetic pathway remain uncharacterized. Here we report a series of interdisciplinary experiments involving the construction of defined S. viridochromogenes mutants, chemical characterization of accumulated intermediates, and in vitro assay of selected enzymes to examine these critical steps in PTT biosynthesis. Our results indicate that early PTT biosynthesis involves a series of catalytic steps that to our knowledge has not been described so far, including a highly unusual reaction for carbon bond cleavage. In sum, we define a pathway for early PTT biosynthesis that is more complex than previously appreciated.

Indexed as

AminobutyratesAnti-Bacterial AgentsCarbonChemistry, PharmaceuticalChromatography, LiquidHerbicidesMagnetic Resonance SpectroscopyMass SpectrometryModels, ChemicalMolecular Sequence DataMutationOrganophosphonatesPeptidesStreptomycesTechnology, PharmaceuticalAminobutyratesAnti-Bacterial AgentsCarbonHerbicidesOrganophosphonatesPeptidesphosphinothricin

Identifiers

PMID17632514
PMCPMC4313788
OpenAlexW2009414144

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.