Evidence map›Paper›PMID 17626087›Full record

ArticleJournal of virology2007

Interaction between the cellular protein eEF1A and the 3'-terminal stem-loop of West Nile virus genomic RNA facilitates viral minus-strand RNA synthesis.

William G Davis, Jerry L Blackwell, Pei-Yong Shi, Margo A Brinton

Abstract read
In one paragraph

Article in Journal of virology, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 86 papers.

0numbers the graph read from it
0cells of the map it votes in
86citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

86 citing papers in PubMed.

  1. Review
  2. Article
  3. Review
  4. Review
  5. Article
  6. Article
  7. Review
  8. Review
  9. Article
  10. Review
  11. Viral Coinfections.Viruses · 2022
    Review
  12. Article
  13. Article
  14. Article
  15. Review
  16. Review
  17. Article
  18. Dengue Virus Infection ofInternational journal of molecular sciences · 2020
    Article
  19. Article
  20. Review

26 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

William G DavisDepartment of Biology, Georgia State University, Atlanta, GA 30302-4010, USA.
Jerry L Blackwell
Pei-Yong Shi
Margo A Brinton

Funding

Regulation of West Nile Virus ReplicationR01AI048088 · NIAID · GEORGIA STATE UNIVERSITY · PI BRINTON, MARGO A · 2003 to 2012
$2.3M
West Nile Virus Life Cycle in Flavivirus-Resistant CellsR21AI065562 · NIAID · WADSWORTH CENTER · PI SHI, PEI-YONG · 2005 to 2006
$400k
NIAID NIH HHS AI 048088NIAID NIH HHS AI 065562NIAID NIH HHS R01 AI048088
6 · The paper itself

Abstract

RNase footprinting and nitrocellulose filter binding assays were previously used to map one major and two minor binding sites for the cell protein eEF1A on the 3'(+) stem-loop (SL) RNA of West Nile virus (WNV) (3). Base substitutions in the major eEF1A binding site or adjacent areas of the 3'(+) SL were engineered into a WNV infectious clone. Mutations that decreased, as well as ones that increased, eEF1A binding in in vitro assays had a negative effect on viral growth. None of these mutations affected the efficiency of translation of the viral polyprotein from the genomic RNA, but all of the mutations that decreased in vitro eEF1A binding to the 3' SL RNA also decreased viral minus-strand RNA synthesis in transfected cells. Also, a mutation that increased the efficiency of eEF1A binding to the 3' SL RNA increased minus-strand RNA synthesis in transfected cells, which resulted in decreased synthesis of genomic RNA. These results strongly suggest that the interaction between eEF1A and the WNV 3' SL facilitates viral minus-strand synthesis. eEF1A colocalized with viral replication complexes (RC) in infected cells and antibody to eEF1A coimmunoprecipitated viral RC proteins, suggesting that eEF1A facilitates an interaction between the 3' end of the genome and the RC. eEF1A bound with similar efficiencies to the 3'-terminal SL RNAs of four divergent flaviviruses, including a tick-borne flavivirus, and colocalized with dengue virus RC in infected cells. These results suggest that eEF1A plays a similar role in RNA replication for all flaviviruses.

Indexed as

3' Untranslated RegionsAnimalsCell LineCricetinaeEncephalitis Viruses, Tick-BorneGenome, ViralMutationNucleic Acid ConformationPeptide Elongation Factor 1Protein BiosynthesisRNA, AntisenseRNA, ViralViral ProteinsVirus ReplicationWest Nile virus3' Untranslated RegionsPeptide Elongation Factor 1RNA, AntisenseRNA, ViralViral Proteins

Identifiers

PMID17626087
PMCPMC2045417

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.