Evidence map›Paper›PMID 17625934›Full record

ArticleFungal genetics and biology : FG & B2007

Analysis of ALS5 and ALS6 allelic variability in a geographically diverse collection of Candida albicans isolates.

Xiaomin Zhao, Soon-Hwan Oh, Robert Jajko, Daniel J Diekema, Michael A Pfaller, Claude Pujol, David R Soll, Lois L Hoyer

Open access · greenAbstract read
In one paragraph

Article in Fungal genetics and biology : FG & B, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
3.5field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed, 47 citations in OpenAlex.

  1. Use of aFrontiers in cellular and infection microbiology · 2024
    Article
  2. Article
  3. Article
  4. Using Genomics to Shape the Definition of the Agglutinin-Like Sequence (Frontiers in cellular and infection microbiology · 2021
    Article
  5. Mechanisms of genome evolution in Candida albicans.Current opinion in microbiology · 2019
    Review
  6. Global analysis of mutations driving microevolution of a heterozygous diploid fungal pathogen.Proceedings of the National Academy of Sciences of the United States of America · 2018
    Article
  7. Biological Roles of Protein-Coding Tandem Repeats in the YeastJournal of fungi (Basel, Switzerland) · 2018
    Article
  8. Article
  9. Review
  10. Candida species biofilm and Candida albicans ALS3 polymorphisms in clinical isolates.Brazilian journal of microbiology : [publication of the Brazilian Society for Microbiology] · 2014
    Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Review
  16. Candida albicans: genotyping methods and clade related phenotypic characteristics.Brazilian journal of microbiology : [publication of the Brazilian Society for Microbiology] · 2010
    Article
  17. Article
  18. On the evolution of fungal and yeast cell walls.Yeast (Chichester, England) · 2010
    Review
  19. Candida infections of the genitourinary tract.Clinical microbiology reviews · 2010
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Xiaomin ZhaoDepartment of Pathobiology, University of Illinois at Urbana-Champaign, Urbana, IL 61802, USA.
Soon-Hwan Oh
Robert Jajko
Daniel J Diekema
Michael A Pfaller
Claude Pujol
David R Soll
Lois L Hoyer
University of Illinois Urbana-Champaign · USUniversity of Iowa · US

Funding

THE ALS GENE FAMILY OF CANDIDA ALBICANSR01DE014158 · NIDCR · UNIVERSITY OF ILLINOIS URBANA-CHAMPAIGN · PI HOYER, LOIS L. · 2000 to 2010
$3.0M
UIUC COLLEGE VET MED COMPLETION SHELL SPACEC06RR016515 · NCRR · UNIVERSITY OF ILLINOIS URBANA-CHAMPAIGN · PI WHITELEY, HERBERT E · 2001 to 2001
$1.5M
NCRR NIH HHS C06 RR016515NCRR NIH HHS C06 RR16515-01NIAID NIH HHS AI2392NIDCR NIH HHS DE14158NIDCR NIH HHS R01 DE014158
6 · The paper itself

Abstract

The Candida albicans ALS (agglutinin-like sequence) gene family encodes eight cell-surface glycoproteins, some of which function in adhesion to host surfaces. ALS genes have a central tandem repeat-encoding domain comprised entirely of head-to-tail copies of a conserved 108-bp sequence. The number of copies of the tandemly repeated sequence varies between C. albicans strains and often between alleles within the same strain. Because ALS alleles can encode different-sized proteins that may have different functional characteristics, defining the range of allelic variability is important. Genomic DNA from C. albicans strains representing the major genetic clades was PCR amplified to determine the number of tandemly repeated sequence copies within the ALS5 and ALS6 central domain. ALS5 alleles had 2-10 tandem repeat sequence copies (mean=4.82 copies) while ALS6 alleles had 2-8 copies (mean=4.00 copies). Despite this variability, tandem repeat copy number was stable in C. albicans strains passaged for 3000 generations. Prevalent alleles and allelic distributions varied among the clades for ALS5 and ALS6. Overall, ALS6 exhibited less variability than ALS5. ALS5 deletions can occur naturally in C. albicans via direct repeats flanking the ALS5 locus. Deletion of both ALS5 alleles was associated particularly with clades III and SA. ALS5 exhibited allelic polymorphisms in the coding region 5' of the tandem repeats; some alleles resembled ALS1, suggesting recombination between these contiguous loci. Natural deletion of ALS5 and the sequence variation within its coding region suggest relaxed selective pressure on this locus, and that Als5p function may be dispensable in C. albicans or redundant within the Als family.

Indexed as

AllelesBase SequenceBlotting, SouthernCandida albicansCell Adhesion MoleculesDNA, FungalEuropeFungal ProteinsGene DeletionGene DosageGene FrequencyGenetic VariationGenome, FungalGeographyMembrane GlycoproteinsMolecular Sequence DataALA1 protein, Candida albicansALS6 protein, Candida albicansCell Adhesion MoleculesDNA, FungalFungal ProteinsMembrane Glycoproteins

Identifiers

PMID17625934
PMCPMC2175174
OpenAlexW2076847153

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.