ArticleTAG. Theoretical and applied genetics. Theoretische und angewandte Genetik2007
Analysis of DNA polymorphisms in sugar beet (Beta vulgaris L.) and development of an SNP-based map of expressed genes.
Article in TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.
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27 citing papers in PubMed, 68 citations in OpenAlex.
- Identification of a candidate self-incompatibility locus in beet (Beta vulgaris).TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2026Article
- Sugar beet long-read reference assembly of genotype KWS2320.NAR genomics and bioinformatics · 2025Article
- Transcriptomic responses of beet to infection by beet mild yellowing virus.BMC plant biology · 2025Article
- Construction of SNP fingerprint and population genetic analysis of honeysuckle germplasm resources in China.Frontiers in plant science · 2023Article
- The effect of heat stress on sugar beet recombination.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2021Article
- Genomes of the wild beets Beta patula and Beta vulgaris ssp. maritima.The Plant journal : for cell and molecular biology · 2019Article
- Report on the development of putative functional SSR and SNP markers in passion fruits.BMC research notes · 2017Article
- Exploring potential of pearl millet germplasm association panel for association mapping of drought tolerance traits.PloS one · 2015Article
- Genetic analysis of bolting after winter in sugar beet (Beta vulgaris L.).TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2014Article
- Polymorphism identification and improved genome annotation of Brassica rapa through Deep RNA sequencing.G3 (Bethesda, Md.) · 2014Article
- The B2 flowering time locus of beet encodes a zinc finger transcription factor.Proceedings of the National Academy of Sciences of the United States of America · 2014Article
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- Genome-wide DNA polymorphisms in two cultivars of mei (Prunus mume sieb. et zucc.).BMC genetics · 2013Article
- A new RNASeq-based reference transcriptome for sugar beet and its application in transcriptome-scale analysis of vernalization and gibberellin responses.BMC genomics · 2012Article
- Integration of gene-based markers in a pearl millet genetic map for identification of candidate genes underlying drought tolerance quantitative trait loci.BMC plant biology · 2012Article
- Genome-wide distribution of genetic diversity and linkage disequilibrium in elite sugar beet germplasm.BMC genomics · 2011Article
- Identification of SNP and SSR markers in eggplant using RAD tag sequencing.BMC genomics · 2011Article
- Conservation and divergence of autonomous pathway genes in the flowering regulatory network of Beta vulgaris.Journal of experimental botany · 2011Article
- Genome-wide functional analysis of the cotton transcriptome by creating an integrated EST database.PloS one · 2011Article
Corrections and comments
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Authors and funding
17 authors at 5 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
A panel of 13 sugar beet lines and one genotype each of the Beta vulgaris cultivars red beet and Swiss chard, and B. vulgaris ssp. maritima were used to identify polymorphisms in alignments of genomic DNA sequences derived from 315 EST- and 43 non-coding RFLP-derived loci. In sugar beet lines, loci of expressed genes showed an average SNP frequency of 1/72 bp, 1 in 58 bp in non-coding sequences, increasing to 1/47 bp upon the addition of the remaining genotypes. Within analysed DNA fragments, alleles at different SNP positions displayed linkage disequilibrium indicative of haplotype structures. On average 2.7 haplotypes were found in sugar beet lines, and haplotype conservation in expressed genes appeared to exceed 500 bp in length. Seven different genotyping techniques including SNP detection by MALDI-TOF mass spectrometry, pyrosequencing and fluorescence scanning of labelled nucleotides were employed to perform 712 segregation analyses for 538 markers in three F(2) populations. Functions were predicted for 492 mapped sequences. Genetic maps comprised 305 loci covering 599.8 cM in population K1, 241 loci distributed over 636.6 cM in population D2, and 166 loci over 507.1 cM in population K2, respectively. Based on 156 markers common to more than one population an integrated map was constructed with 524 loci covering 664.3 cM. For 377 loci the genome positions of the most similar sequences from A. thaliana were identified, but little evidence for previously presented ancestral genome structures was found.
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