Evidence map›Paper›PMID 17616611›Full record

ArticleApplied and environmental microbiology2007

Emergence of a virulent clade of Vibrio vulnificus and correlation with the presence of a 33-kilobase genomic island.

Ana Luisa V Cohen, James D Oliver, Angelo DePaola, Edward J Feil, E Fidelma Boyd

Open access · greenAbstract read
In one paragraph

Article in Applied and environmental microbiology, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 44 papers.

0numbers the graph read from it
0cells of the map it votes in
44citing papers in PubMed
3.9field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

44 citing papers in PubMed, 85 citations in OpenAlex.

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  7. Environmental role of pathogenic traits inJournal of bacteriology · 2018
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  8. Occurrence of clinical genotypeJournal of food science and technology · 2017
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  9. MARTX Toxin in the Zoonotic Serovar ofFrontiers in cellular and infection microbiology · 2017
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  10. Phylogeny ofFrontiers in microbiology · 2017
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  11. Article
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  13. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 5 institutions in 3 countries.

Ana Luisa V CohenDepartment of Biological Sciences, University of Delaware, Newark, DE 19716, USA.
James D Oliver
Angelo DePaola
Edward J Feil
E Fidelma Boyd
Dauphin Island Sea Lab · USNational University of Ireland · IEUniversity of Bath · GBUniversity of Delaware · USUniversity of North Carolina at Charlotte · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Vibrio vulnificus is a ubiquitous inhabitant of the marine coastal environment, and an important pathogen of humans. We characterized a globally distributed sample of environmental isolates from a range of habitats and hosts and compared these with isolates recovered from cases of human infection. Multilocus sequence typing data using six housekeeping genes divided 63 of the 67 isolates into the two main lineages previously noted for this species, and this division was also confirmed using the 16S rRNA and open reading frame VV0401 markers. Lineage I was comprised exclusively of biotype 1 isolates, whereas lineage II contained biotype 1 and all biotype 2 isolates. Four isolates did not cluster within either lineage: two biotype 3 and two biotype 1 isolates. The proportion of isolates recovered from a clinical setting was noted to be higher in lineage I than in lineage II. Lineage I isolates were also associated with a 33-kb genomic island (region XII), one of three regions identified by genome comparisons as unique to the species. Region XII contained an arylsulfatase gene cluster, a sulfate reduction system, two chondroitinase genes, and an oligopeptide ABC transport system, all of which are absent from the majority of lineage II isolates. Arylsulfatases and the sulfate reduction system, along with performing a scavenging role, have been hypothesized to play a role in pathogenic processes in other bacteria. Our data suggest that lineage I may have a higher pathogenic potential and that region XII, along with other regions, may give isolates a selective advantage either in the human host or in the aquatic environment or both.

Indexed as

Genetic VariationAnimalsBacterial ProteinsBacterial Typing TechniquesFishesGenomic IslandsGeologic SedimentsHumansMolecular Sequence DataPolymorphism, GeneticSeawaterSequence Analysis, DNAShellfishVibrio InfectionsVibrio vulnificusVirulenceBacterial Proteins

Identifiers

PMID17616611
PMCPMC2042058
OpenAlexW2129821327

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.