Evidence map›Paper›PMID 17615066›Full record

ArticleBMC microbiology2007

Characterization of the dsDNA prophage sequences in the genome of Neisseria gonorrhoeae and visualization of productive bacteriophage.

Andrzej Piekarowicz, Aneta Kłyz, Michał Majchrzak, Monika Adamczyk-Popławska, Timothy K Maugel, Daniel C Stein

Open access · goldAbstract read
In one paragraph

Article in BMC microbiology, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed
0.6field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed, 52 citations in OpenAlex.

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  7. Genomic Diversity and Chromosomal Rearrangements inInternational journal of molecular sciences · 2022
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  19. DNA uptake sequences inMicrobial genomics · 2016
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Andrzej PiekarowiczInstitute of Microbiology, Warsaw University, Miecznikowa 1, Warsaw, Poland. anpiek@biol.uw.edu.pl <anpiek@biol.uw.edu.pl>
Aneta Kłyz
Michał Majchrzak
Monika Adamczyk-Popławska
Timothy K Maugel
Daniel C Stein
University of Warsaw · PLUniversity of Maryland, College Park · US

Funding

LIPOOLIGOSACCHARIDE BIOSYNTHESIS IN NEISSERIACEAER01AI024452 · NIAID · UNIVERSITY OF MARYLAND COLLEGE PK CAMPUS · PI STEIN, DANIEL C · 1995 to 2004
$1.3M
Lipooligosaccharide biosynthesis in NeisseriaceaeR56AI024452 · NIAID · UNIV OF MARYLAND, COLLEGE PARK · PI STEIN, DANIEL C · 2006 to 2006
$359k
MICROBIAL PATHOGEN GENOME PROJECT--NEISSERIA GONORRHOEAER01AI038399 · NIAID · UNIVERSITY OF OKLAHOMA HLTH SCIENCES CTR · PI DYER, DAVID W. · 1995 to 1998
–
LIPOOLIGOSACCHARIDE BIOSYNTHESIS IN NEISSERIACEAER29AI024452 · NIAID · UNIVERSITY OF MARYLAND COLLEGE PK CAMPUS · PI STEIN, DANIEL C · 1988 to 1992
–
NIAID NIH HHS AI24452NIAID NIH HHS AI38399NIAID NIH HHS R01 AI024452NIAID NIH HHS R56 AI024452
6 · The paper itself

Abstract

backgroundBioinformatic analysis of the genome sequence of Neisseria gonorrhoeae revealed the presence of nine probable prophage islands. The distribution, conservation and function of many of these sequences, and their ability to produce bacteriophage particles are unknown.

resultsOur analysis of the genomic sequence of FA1090 identified five genomic regions (NgoPhi1 - 5) that are related to dsDNA lysogenic phage. The genetic content of the dsDNA prophage sequences were examined in detail and found to contain blocks of genes encoding for proteins homologous to proteins responsible for phage DNA replication, structural proteins and proteins responsible for phage assembly. The DNA sequences from NgoPhi1, NgoPhi2 and NgoPhi3 contain some significant regions of identity. A unique region of NgoPhi2 showed very high similarity with the Pseudomonas aeruginosa generalized transducing phage F116. Comparative analysis at the nucleotide and protein levels suggests that the sequences of NgoPhi1 and NgoPhi2 encode functionally active phages, while NgoPhi3, NgoPhi4 and NgoPhi5 encode incomplete genomes. Expression of the NgoPhi1 and NgoPhi2 repressors in Escherichia coli inhibit the growth of E. coli and the propagation of phage lambda. The NgoPhi2 repressor was able to inhibit transcription of N. gonorrhoeae genes and Haemophilus influenzae HP1 phage promoters. The holin gene of NgoPhi1 (identical to that encoded by NgoPhi2), when expressed in E. coli, could serve as substitute for the phage lambda s gene. We were able to detect the presence of the DNA derived from NgoPhi1 in the cultures of N. gonorrhoeae. Electron microscopy analysis of culture supernatants revealed the presence of multiple forms of bacteriophage particles.

conclusionThese data suggest that the genes similar to dsDNA lysogenic phage present in the gonococcus are generally conserved in this pathogen and that they are able to regulate the expression of other neisserial genes. Since phage particles were only present in culture supernatants after induction with mitomycin C, it indicates that the gonococcus also regulates the expression of bacteriophage genes.

Indexed as

Bacteriophage lambdaBacteriophagesCloning, MolecularEscherichia coliGenome, BacterialGenomic IslandsHaemophilus influenzaeNeisseria gonorrhoeaeProphagesPseudomonas PhagesRepressor ProteinsSequence Homology, Amino AcidViral ProteinsVirionRepressor ProteinsViral Proteins

Identifiers

PMID17615066
PMCPMC1931599
OpenAlexW1982427468

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.