Evidence map›Paper›PMID 17615063›Full record

ArticleGenome biology2007

A proteome-wide protein interaction map for Campylobacter jejuni.

Jodi R Parrish, Jingkai Yu, Guozhen Liu, Julie A Hines, Jason E Chan, Bernie A Mangiola, Huamei Zhang, Svetlana Pacifico, Farshad Fotouhi, Victor J DiRita and 3 more

Open access · goldAbstract read
In one paragraph

Article in Genome biology, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 98 papers.

0numbers the graph read from it
0cells of the map it votes in
98citing papers in PubMed
9.8field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

98 citing papers in PubMed, 237 citations in OpenAlex.

  1. Article
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  10. Two-component regulatory systems inFrontiers in cellular and infection microbiology · 2022
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  11. TheMicroorganisms · 2021
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  12. Computationally Reconstructed Interactome ofInternational journal of molecular sciences · 2021
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  13. Review
  14. A Genome-Scale Co-Functional Network ofMolecules and cells · 2019
    Article
  15. Protein-Protein Interactions inFrontiers in microbiology · 2019
    Review
  16. Article
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  19. Article
  20. Review

38 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 3 institutions in 1 country.

Jodi R ParrishCenter for Molecular Medicine and Genetics, Wayne State University School of Medicine, Detroit, MI 48201, USA.
Jingkai Yu
Guozhen Liu
Julie A Hines
Jason E Chan
Bernie A Mangiola
Huamei Zhang
Svetlana Pacifico
Farshad Fotouhi
Victor J DiRita
Trey Ideker
Phillip Andrews
Russell L Finley
Wayne State University · USUniversity of California, San Diego · USUniversity of Michigan–Ann Arbor · US

Funding

A Drosophila genome-wide protein interaction mapR01HG001536 · NHGRI · WAYNE STATE UNIVERSITY · PI FINLEY, RUSSELL L · 2002 to 2009
$3.6M
ISOLATION OF CDNAS FOR PROTEIN INTERACTION NETWORKSR29HG001536 · NHGRI · WAYNE STATE UNIVERSITY · PI FINLEY, RUSSELL L · 1996 to 2001
$195k
NCRR NIH HHS RR18327NHGRI NIH HHS HG001536NHGRI NIH HHS R01 HG001536NHGRI NIH HHS R29 HG001536
6 · The paper itself

Abstract

backgroundData from large-scale protein interaction screens for humans and model eukaryotes have been invaluable for developing systems-level models of biological processes. Despite this value, only a limited amount of interaction data is available for prokaryotes. Here we report the systematic identification of protein interactions for the bacterium Campylobacter jejuni, a food-borne pathogen and a major cause of gastroenteritis worldwide.

resultsUsing high-throughput yeast two-hybrid screens we detected and reproduced 11,687 interactions. The resulting interaction map includes 80% of the predicted C. jejuni NCTC11168 proteins and places a large number of poorly characterized proteins into networks that provide initial clues about their functions. We used the map to identify a number of conserved subnetworks by comparison to protein networks from Escherichia coli and Saccharomyces cerevisiae. We also demonstrate the value of the interactome data for mapping biological pathways by identifying the C. jejuni chemotaxis pathway. Finally, the interaction map also includes a large subnetwork of putative essential genes that may be used to identify potential new antimicrobial drug targets for C. jejuni and related organisms.

conclusionThe C. jejuni protein interaction map is one of the most comprehensive yet determined for a free-living organism and nearly doubles the binary interactions available for the prokaryotic kingdom. This high level of coverage facilitates pathway mapping and function prediction for a large number of C. jejuni proteins as well as orthologous proteins from other organisms. The broad coverage also facilitates cross-species comparisons for the identification of evolutionarily conserved subnetworks of protein interactions.

Indexed as

Protein Interaction MappingBacterial ProteinsCampylobacter jejuniGenes, BacterialProteomeTwo-Hybrid System TechniquesBacterial ProteinsProteome

Identifiers

PMID17615063
PMCPMC2323224
OpenAlexW2111795091

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.