Evidence map›Paper›PMID 17609373›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2007

Laboratory evolution of one disulfide isomerase to resemble another.

Annie Hiniker, Guoping Ren, Begoña Heras, Ying Zheng, Stephanie Laurinec, Richard W Jobson, Jeanne A Stuckey, Jennifer L Martin, James C A Bardwell

Abstract readComparative Study
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Review
  8. Article
  9. Article
  10. Engineered pathways for correct disulfide bond oxidation.Antioxidants & redox signaling · 2011
    Article
  11. Review
  12. Article
  13. Article
  14. Article
  15. DSB proteins and bacterial pathogenicity.Nature reviews. Microbiology · 2009
    Review
  16. Disulfide bond isomerization in prokaryotes.Biochimica et biophysica acta · 2008
    Review
  17. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Annie HinikerMedical Scientist Training Program, University of Michigan, Ann Arbor, MI 48109, USA.
Guoping Ren
Begoña Heras
Ying Zheng
Stephanie Laurinec
Richard W Jobson
Jeanne A Stuckey
Jennifer L Martin
James C A Bardwell

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

It is often difficult to determine which of the sequence and structural differences between divergent members of multigene families are functionally important. Here we use a laboratory evolution approach to determine functionally important structural differences between two distantly related disulfide isomerases, DsbC and DsbG from Escherichia coli. Surprisingly, we found single amino acid substitutions in DsbG that were able to complement dsbC in vivo and have more DsbC-like isomerase activity in vitro. Crystal structures of the three strongest point mutants, DsbG K113E, DsbG V216M, and DsbG T200M, reveal changes in highly surface-exposed regions that cause DsbG to more closely resemble the distantly related DsbC. In this case, laboratory evolution appears to have taken a direct route to allow one protein family member to complement another, with single substitutions apparently bypassing much of the need for multiple changes that took place over approximately 0.5 billion years of evolution. Our findings suggest that, for these two proteins at least, regions important in determining functional differences may represent only a tiny fraction of the overall protein structure.

Indexed as

Directed Molecular EvolutionAmino Acid SubstitutionCopperCrystallography, X-RayEscherichia coliEscherichia coli ProteinsOxidoreductasesPeriplasmic ProteinsPoint MutationProtein Disulfide-IsomerasesCopperDsbG protein, E coliEscherichia coli ProteinsOxidoreductasesPeriplasmic ProteinsProtein Disulfide-Isomerases

Identifiers

PMID17609373
PMCPMC1906722

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.