Evidence map›Paper›PMID 17609285›Full record

ArticleJournal of virology2007

Kaposi's sarcoma-associated herpesvirus ORF57 protein enhances mRNA accumulation independently of effects on nuclear RNA export.

Michael Nekorchuk, Zhao Han, Ting-Ting Hsieh, Sankar Swaminathan

Open access · greenAbstract read
In one paragraph

Article in Journal of virology, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 54 papers.

0numbers the graph read from it
0cells of the map it votes in
54citing papers in PubMed
2.1field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

54 citing papers in PubMed, 66 citations in OpenAlex.

  1. Review
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  11. CRISPR/Cas9-Mediated Knockout andJournal of virology · 2019
    Article
  12. Review
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. CLIP-seq to Identify KSHV ORF57-Binding RNA in Host B Cells.Current protocols in microbiology · 2016
    Article
  19. Review
  20. Importance of codon usage for the temporal regulation of viral gene expression.Proceedings of the National Academy of Sciences of the United States of America · 2015
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Michael NekorchukUF Shands Cancer Center, University of Florida, 1376 Mowry Road, Gainesville, FL 32610-3633, USA.
Zhao Han
Ting-Ting Hsieh
Sankar Swaminathan
University of Florida Health · USUniversity of Florida · US

Funding

POSTTRANSCRIPTIONAL GENE REGULATION BY EBV SM PROTEINR01CA081133 · NCI · UNIVERSITY OF UTAH · PI SWAMINATHAN, SANKAR · 1999 to 2022
$4.9M
Viral and cellular gene regulation during lytic KSHV replicationR01CA119905 · NCI · UNIVERSITY OF UTAH · PI SWAMINATHAN, SANKAR · 2006 to 2010
$1.1M
NCI NIH HHS CA 081133NCI NIH HHS R01 CA081133NCI NIH HHS R01 CA119905VA VA 119905
6 · The paper itself

Abstract

The ORF57 protein expressed by Kaposi's sarcoma-associated herpesvirus (KSHV) during lytic replication is essential for KSHV virion production. ORF57 enhances gene expression by increasing accumulation of target gene mRNAs. ORF57 interacts with the cellular export factor REF and with RNA, suggesting that it may provide target mRNAs with access to REF, which mediates nuclear RNA export by binding to TAP/NXF1. A mutational analysis of ORF57 was performed to study the role of REF binding, RNA interaction, and multimerization in ORF57 function. ORF57 was shown to directly bind RNA. The ability to bind REF did not correlate with ORF57 function in enhancing mRNA accumulation. ORF57 enhanced the nuclear levels of mRNA and PAN, a nuclear KSHV RNA, and the activity of various ORF57 mutants on the levels of mRNA paralleled their ability to enhance nuclear PAN accumulation, suggesting that ORF57 may also act on messenger RNAs by export-independent effects on RNA stability. Finally, an ORF57 mutant lacking a region homologous to a nucleolar localization signal in herpesvirus saimiri was constructed. This mutant retained function, demonstrating that, unlike the ORF57 homolog in herpesvirus saimiri, nucleolar trafficking is not required for ORF57 function in enhancing mRNA accumulation.

Indexed as

Active Transport, Cell NucleusCell NucleusGene Expression Regulation, ViralHeLa CellsHerpesvirus 8, HumanHumansNuclear Localization SignalsOpen Reading FramesProtein BindingRepressor ProteinsRNA-Binding ProteinsRNA, MessengerRNA, ViralTrans-ActivatorsViral ProteinsViral Regulatory and Accessory ProteinsNFX1 protein, humanNuclear Localization SignalsORF57 protein, Herpesvirus saimiriRepressor ProteinsRNA-Binding ProteinsRNA, MessengerRNA, ViralTrans-ActivatorsViral ProteinsViral Regulatory and Accessory Proteins

Identifiers

PMID17609285
PMCPMC2045429
OpenAlexW2135467346

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.