Evidence map›Paper›PMID 17606911›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2007

Analysis and functional evaluation of the hair-cell transcriptome.

Brian M McDermott, Jessica M Baucom, A J Hudspeth

Open access · greenAbstract readComparative StudyValidation Study
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 41 papers.

0numbers the graph read from it
0cells of the map it votes in
41citing papers in PubMed
1.3field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

41 citing papers in PubMed, 57 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Hair cell toxicology: With the help of a little fish.Frontiers in cell and developmental biology · 2022
    Review
  5. Transcriptomic Analyses of Inner Ear Sensory Epithelia in Zebrafish.Anatomical record (Hoboken, N.J. : 2007) · 2020
    Article
  6. Review
  7. Article
  8. Article
  9. Transcriptomic Profiling of Zebrafish Hair Cells Using RiboTag.Frontiers in cell and developmental biology · 2018
    Article
  10. Transmission Disrupted: Modeling Auditory Synaptopathy in Zebrafish.Frontiers in cell and developmental biology · 2018
    Review
  11. Article
  12. The genetics of hair-cell function in zebrafish.Journal of neurogenetics · 2017
    Review
  13. Review
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Sensory hair cell death and regeneration in fishes.Frontiers in cellular neuroscience · 2015
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 1 country.

Brian M McDermottHoward Hughes Medical Institute and Laboratory of Sensory Neuroscience, The Rockefeller University, 1230 York Avenue, New York, NY 10021-6399, USA.
Jessica M Baucom
A J Hudspeth
Howard Hughes Medical Institute · USRockefeller University · US

Funding

TRANSDUCTION MECHANISM OF HAIR CELLSR01DC000241 · NIDCD · UNIVERSITY OF TEXAS SW MED CTR/DALLAS · PI HUDSPETH, ALBERT JAMES · 1989 to 2011
$4.1M
Differentially expressed genes in inner ear hair cellsF32DC006539 · NIDCD · ROCKEFELLER UNIVERSITY · PI MCDERMOTT, BRIAN MICHAEL · 2003 to 2006
$148k
ELECTROPHYSIOLOGICAL STUDIES OF THE VOMERONASAL SYSTEMF32DC000241 · NIDCD · WORCESTER FOUNDATION FOR BIOMEDICAL RES · PI JANG, TAICHANG · 1996 to 1998
–
NIDCD NIH HHS DC00241NIDCD NIH HHS DC006539NIDCD NIH HHS F32 DC000241NIDCD NIH HHS F32 DC006539NIDCD NIH HHS R01 DC000241
6 · The paper itself

Abstract

An understanding of the molecular bases of the morphogenesis, organization, and functioning of hair cells requires that the genes expressed in these cells be identified and their functions ascertained. After purifying zebrafish hair cells and detecting mRNAs with oligonucleotide microarrays, we developed a subtractive strategy that identified 1,037 hair cell-expressed genes whose cognate proteins subserve functions including membrane transport, synaptic transmission, transcriptional control, cellular adhesion and signal transduction, and cytoskeletal organization. To assess the validity of the subtracted hair-cell data set, we verified the presence of 11 transcripts in inner-ear tissue. Functional evaluation of two genes from the subtracted data set revealed their importance in hair bundles: zebrafish larvae bearing the seahorse and ift 172 mutations display specific kinociliary defects. Moreover, a search for candidate genes that underlie heritable deafness identified a human ortholog of a zebrafish hair-cell gene whose map location is bracketed by the markers of a deafness locus.

Indexed as

AnimalsDeafnessGene Expression Regulation, DevelopmentalHair Cells, AuditoryHepatocytesHumansMiceMutationOligonucleotide Array Sequence AnalysisTranscription, GeneticZebrafish

Identifiers

PMID17606911
PMCPMC1905926
OpenAlexW2032563711

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.