Evidence map›Paper›PMID 17606604›Full record

ArticleInfection and immunity2007

A nonsense mutation in agrA accounts for the defect in agr expression and the avirulence of Staphylococcus aureus 8325-4 traP::kan.

Rajan P Adhikari, Staffan Arvidson, Richard P Novick

Abstract read
In one paragraph

Article in Infection and immunity, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 36 papers.

0numbers the graph read from it
0cells of the map it votes in
36citing papers in PubMed
3.4field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

36 citing papers in PubMed, 77 citations in OpenAlex.

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  16. Comparative Secretome Analyses of Human and ZoonoticMolecular & cellular proteomics : MCP · 2018
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 3 institutions in 2 countries.

Rajan P AdhikariProgram in Molecular Pathogenesis, Skirball Institute, New York University Medical Center, New York, NY 10016, USA.
Staffan Arvidson
Richard P Novick
Karolinska Institutet · SENew York University · USUniversity Medical Center · US

Funding

MOLECULAR GENETICS OF EXOTOXIN REGULATION IN S. AUREUSR01AI030138 · NIAID · PUBLIC HEALTH RESEARCH INSTITUTE · PI NOVICK, RICHARD P. · 1991 to 2011
$3.5M
NIAID NIH HHS R01 AI030138NIAID NIH HHS R01-AI30138
6 · The paper itself

Abstract

TraP is a triply phosphorylated staphylococcal protein that has been hypothesized to be the mediator of a second Staphylococcus aureus quorum-sensing system, "SQS1," that controls expression of the agr system and therefore is essential for the organism's virulence. This hypothesis was based on the loss of agr expression and virulence by a traP mutant of strain 8325-4 and was supported by full complementation of both phenotypic defects by the cloned traP gene in strain NB8 (Y. Gov, I. Borovok, M. Korem, V. K. Singh, R. K. Jayaswal, B. J. Wilkinson, S. M. Rich, and N. Balaban, J. Biol. Chem. 279:14665-14672, 2004), in which the wild-type traP gene was expressed in trans in the 8325-4 traP mutant. We initiated a study of the mechanism by which TraP activates agr and found that the traP mutant strain used for this and other recently published studies has a second mutation, an adventitious stop codon in the middle of agrA, the agr response regulator. The traP mutation, once separated from the agrA defect by outcrossing, had no effect on agr expression or virulence, indicating that the agrA defect accounts fully for the lack of agr expression and for the loss of virulence attributed to the traP mutation. In addition, DNA sequencing showed that the agrA gene in strain NB8 (Gov et al., J. Biol. Chem., 2004), in contrast to that in the agr-defective 8325-4 traP mutant strain, had the wild-type sequence; further, the traP mutation in that strain, when outcrossed, also had no effect on agr expression.

Indexed as

Codon, NonsenseAmino Acid SequenceAnimalsBacterial ProteinsBase SequenceMiceMice, HairlessMolecular Sequence DataStaphylococcal InfectionsStaphylococcus aureusTrans-ActivatorsVirulenceAgr protein, Staphylococcus aureusBacterial ProteinsCodon, NonsenseTrans-Activators

Identifiers

PMID17606604
PMCPMC1951176
OpenAlexW2060911131

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.