Evidence map›Paper›PMID 17604454›Full record

ArticlePLoS genetics2007

The Genographic Project public participation mitochondrial DNA database.

Doron M Behar, Saharon Rosset, Jason Blue-Smith, Oleg Balanovsky, Shay Tzur, David Comas, R John Mitchell, Lluis Quintana-Murci, Chris Tyler-Smith, R Spencer Wells and 1 more

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in PLoS genetics, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 52 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
52citing papers in PubMed, 2 pooled it
7.6field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

52 citing papers in PubMed, 2 syntheses or guidelines pooled it, 169 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Genetic ancestry of families of putative Inka descent.Molecular genetics and genomics : MGG · 2018
    Trial
  4. Article
  5. Article
  6. Article
  7. Article
  8. Review
  9. Ethical Guidance in Human Paleogenomics: New and Ongoing Perspectives.Annual review of genomics and human genetics · 2022
    Review
  10. Article
  11. Article
  12. Evolving mtDNA populations within cells.Biochemical Society transactions · 2019
    Review
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Review
  19. Two specific mutations are prevalent causes of recessive retinitis pigmentosa in North American patients of Jewish ancestry.Genetics in medicine : official journal of the American College of Medical Genetics · 2015
    Article
  20. Article
4 · The record

Corrections and comments

  • Erratum issued
5 · Who and what money

Authors and funding

11 authors at 7 institutions in 7 countries.

Doron M Behar
Saharon Rosset
Jason Blue-Smith
Oleg Balanovsky
Shay Tzur
David Comas
R John Mitchell
Lluis Quintana-Murci
Chris Tyler-Smith
R Spencer Wells
Genographic Consortium
National Geographic Society · USCentre National de la Recherche Scientifique · FRLa Trobe University · AUPompeu Fabra University · ESRambam Health Care Campus · ILResearch Centre for Medical Genetics · RUWellcome Sanger Institute · GB

Funding

Wellcome Trust
6 · The paper itself

Abstract

The Genographic Project is studying the genetic signatures of ancient human migrations and creating an open-source research database. It allows members of the public to participate in a real-time anthropological genetics study by submitting personal samples for analysis and donating the genetic results to the database. We report our experience from the first 18 months of public participation in the Genographic Project, during which we have created the largest standardized human mitochondrial DNA (mtDNA) database ever collected, comprising 78,590 genotypes. Here, we detail our genotyping and quality assurance protocols including direct sequencing of the mtDNA HVS-I, genotyping of 22 coding-region SNPs, and a series of computational quality checks based on phylogenetic principles. This database is very informative with respect to mtDNA phylogeny and mutational dynamics, and its size allows us to develop a nearest neighbor-based methodology for mtDNA haplogroup prediction based on HVS-I motifs that is superior to classic rule-based approaches. We make available to the scientific community and general public two new resources: a periodically updated database comprising all data donated by participants, and the nearest neighbor haplogroup prediction tool.

Indexed as

Databases, Nucleic AcidDNA, MitochondrialFemaleHumansMaleMitochondriaPolymorphism, Single NucleotideSequence Analysis, DNADNA, Mitochondrial

Identifiers

PMID17604454
PMCPMC1904368
OpenAlexW1995653522

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.