Evidence map›Paper›PMID 17601781›Full record

ArticleJournal of bacteriology2007

Regulation of pyr gene expression in Mycobacterium smegmatis by PyrR-dependent translational repression.

Christopher J Fields, Robert L Switzer

Open access · bronzeAbstract read
In one paragraph

Article in Journal of bacteriology, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
0.5field-weighted citation impact, top 34% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 21 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Genetics of Lactococci.Microbiology spectrum · 2019
    Review
  7. Article
  8. Oxidation of dCTP contributes to antibiotic lethality in stationary-phase mycobacteria.Proceedings of the National Academy of Sciences of the United States of America · 2018
    Article
  9. Article
  10. Discoveries in bacterial nucleotide metabolism.The Journal of biological chemistry · 2009
    Review
  11. Review
  12. Expression, purification and preliminary X-ray diffraction studies of the transcriptional factor PyrR from Bacillus halodurans.Acta crystallographica. Section F, Structural biology and crystallization communications · 2008
    Article
  13. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Christopher J FieldsDepartment of Biochemistry, University of Illinois, 600 South Mathews, Urbana, IL 61801, USA.
Robert L Switzer
University of Illinois Urbana-Champaign · US

Funding

NOVEL CONTROL MECHANISMS IN ENDOSPORE FORMATIONR01GM047112 · NIGMS · UNIVERSITY OF ILLINOIS URBANA-CHAMPAIGN · PI SWITZER, ROBERT L · 1991 to 2006
$2.0M
NIGMS NIH HHS GM47112NIGMS NIH HHS R01 GM047112
6 · The paper itself

Abstract

Regulation of pyrimidine biosynthetic (pyr) genes by a transcription attenuation mechanism that is mediated by the PyrR mRNA-binding regulatory protein has been demonstrated for numerous gram-positive bacteria. Mycobacterial genomes specify pyrR genes and contain obvious PyrR-binding sequences in the initially transcribed regions of their pyr operons, but transcription antiterminator and attenuation terminator sequences are absent from their pyr 5' leader regions. This work demonstrates that repression of pyr operon expression in Mycobacterium smegmatis by exogenous uracil requires the pyrR gene and the pyr leader RNA sequence for binding of PyrR. Plasmids containing the M. smegmatis pyr promoter-leader region translationally fused to lacZ also displayed pyrR-dependent repression, but transcriptional fusions of the same sequences to a lacZ gene that retained the lacZ ribosome-binding site were not regulated by PyrR plus uracil. We propose that PyrR regulates pyr expression in M. smegmatis, other mycobacteria, and probably in numerous other bacteria by a translational repression mechanism in which nucleotide-regulated binding of PyrR occludes the first ribosome-binding site of the pyr operon.

Indexed as

Gene Expression Regulation, BacterialProtein Biosynthesis5' Untranslated RegionsArtificial Gene FusionBacterial Proteinsbeta-GalactosidaseGenes, ReporterHydrogen-Ion ConcentrationModels, BiologicalMycobacterium smegmatisPentosyltransferasesProtein BindingPyrimidinesRepressor ProteinsRNA, BacterialUracil5' Untranslated RegionsBacterial Proteinsbeta-GalactosidasePentosyltransferasesPyrimidinesPyrR protein, bacteriaRepressor ProteinsRNA, BacterialUracil

Identifiers

PMID17601781
PMCPMC1951914
OpenAlexW2105098330

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.