Evidence map›Paper›PMID 17600150›Full record

ArticleProtein science : a publication of the Protein Society2007

Solution structure of the general transcription factor 2I domain in mouse TFII-I protein.

Yukiko Doi-Katayama, Fumiaki Hayashi, Makoto Inoue, Takashi Yabuki, Masaaki Aoki, Eiko Seki, Takayoshi Matsuda, Takanori Kigawa, Mayumi Yoshida, Mikako Shirouzu and 4 more

Abstract read
In one paragraph

Article in Protein science : a publication of the Protein Society, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed.

  1. Article
  2. Review
  3. TFII-I/Gtf2i and Erythro-Megakaryopoiesis.Frontiers in physiology · 2020
    Article
  4. Article
  5. Pathophysiology of TFII-I: Old Guard Wearing New Hats.Trends in molecular medicine · 2017
    Review
  6. Article
  7. Article
  8. Evolution of general transcription factors.Journal of molecular evolution · 2013
    Article
  9. Article
  10. Review
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors.

Yukiko Doi-KatayamaRIKEN Genomic Sciences Center, Tsurumi-ku, Yokohama 230-0045, Japan.
Fumiaki Hayashi
Makoto Inoue
Takashi Yabuki
Masaaki Aoki
Eiko Seki
Takayoshi Matsuda
Takanori Kigawa
Mayumi Yoshida
Mikako Shirouzu
Takaho Terada
Yoshihide Hayashizaki
Shigeyuki Yokoyama
Hiroshi Hirota

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The general transcription factor TFII-I, with the corresponding gene name GTF2I, is an unusual transcriptional regulator that associates with both basal and signal-induced transcription factors. TFII-I consists of six GTF2I repeat domains, called I-repeats R1-R6. The structure and function of the GTF2I domain are not clearly understood, even though it contains a helix-loop-helix motif, which is considered to be the protein-protein interaction area, based on biochemical analyses. Here, we report the solution structure of the fifth repeat of the six GTF2I repeat domains from murine TFII-I, which was determined by heteronuclear multidimensional NMR spectroscopy (PDB code 1Q60). The three-dimensional structure of the GTF2I domain is classified as a new fold, consisting of four helices (residues 8-24, 34-39, 63-71, and 83-91), two antiparallel beta strands (residues 44-47 and 77-80), and a well-defined loop containing two beta-turns between sheet 1 and helix 3. All of the repeats probably have similar folds to that of repeat 5, because the conserved residues in the GTF2I repeat domains are assembled on the hydrophobic core, turns, and secondary structure elements, as revealed by a comparison of the sequences of the first through the sixth GTF2I repeats in TFII-I.

Indexed as

Amino Acid SequenceAnimalsMiceModels, MolecularMolecular Sequence DataNuclear Magnetic Resonance, BiomolecularProtein Structure, TertiarySequence AlignmentSolutionsTranscription Factors, TFIIGtf2i protein, mouseSolutionsTranscription Factors, TFII

Identifiers

PMID17600150
PMCPMC2203370

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.