Evidence map›Paper›PMID 17597816›Full record

ArticleThe Journal of investigative dermatology2008

Defective cell cycle checkpoint functions in melanoma are associated with altered patterns of gene expression.

William K Kaufmann, Kathleen R Nevis, Pingping Qu, Joseph G Ibrahim, Tong Zhou, Yingchun Zhou, Dennis A Simpson, Jennifer Helms-Deaton, Marila Cordeiro-Stone, Dominic T Moore and 6 more

Open access · greenAbstract read
In one paragraph

Article in The Journal of investigative dermatology, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 35 papers.

0numbers the graph read from it
0cells of the map it votes in
35citing papers in PubMed
2.1field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

35 citing papers in PubMed, 63 citations in OpenAlex.

  1. iScience · 2026
    Article
  2. Article
  3. A Novel Role for RNF126 in the Promotion of G2 Arrest via Interaction With 14-3-3σ.International journal of radiation oncology, biology, physics · 2022
    Article
  4. Review
  5. Review
  6. Article
  7. Mechanisms and prevention of UV-induced melanoma.Photodermatology, photoimmunology & photomedicine · 2018
    Review
  8. Review
  9. Targeted deactivation of cancer-associated fibroblasts by β-catenin ablation suppresses melanoma growth.Tumour biology : the journal of the International Society for Oncodevelopmental Biology and Medicine · 2016
    Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Nestin depletion induces melanoma matrix metalloproteinases and invasion.Laboratory investigation; a journal of technical methods and pathology · 2014
    Article
  15. Article
  16. Mechanisms of chromosomal instability in melanoma.Environmental and molecular mutagenesis · 2014
    Article
  17. Development of DNA damage response signaling biomarkers using automated, quantitative image analysis.The journal of histochemistry and cytochemistry : official journal of the Histochemistry Society · 2014
    Article
  18. Dominant effects of Δ40p53 on p53 function and melanoma cell fate.The Journal of investigative dermatology · 2014
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 5 institutions in 1 country.

William K KaufmannDepartment of Pathology and Laboratory Medicine, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina, USA. wkarlk@med.unc.edu
Kathleen R Nevis
Pingping Qu
Joseph G Ibrahim
Tong Zhou
Yingchun Zhou
Dennis A Simpson
Jennifer Helms-Deaton
Marila Cordeiro-Stone
Dominic T Moore
Nancy E Thomas
Honglin Hao
Zhi Liu
Janiel M Shields
Glynis A Scott
Norman E Sharpless
University of North Carolina at Chapel Hill · USUniversity of North Carolina Health Care · USUNC Lineberger Comprehensive Cancer CenterCenter for Environmental Health · USUniversity of Rochester · US

Funding

Virology Research Program (Program 4)P30CA016086 · NCI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI Deborah F. Tate · 1985 to 2026
$201.5M
UNC-CH CENTER FOR ENVIRONMENTAL HEALTH &SUSCEPTIBILITYP30ES010126 · NIEHS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI Melissa A. Troester · 2001 to 2026
$36.3M
Profiles of Sucsceptibility to Toxicant StressU19ES011391 · NIEHS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI KAUFMANN, WILLIAM K · 2001 to 2007
$8.4M
Melanoma RAS/BRAF Mutation:Heterogeneity-Risk-PrognosisR01CA112243 · NCI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI THOMAS, NANCY E. · 2005 to 2014
$5.4M
ENVIRONMENTAL PATHOLOGYT32ES007017 · NIEHS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI KAUFMAN, DAVID G. · 1985 to 2011
$5.1M
Biostatistics for Research in Genomics and CancerT32CA106209 · NCI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI JOSEPH G IBRAHIM, Naim Ur Rashid · 2004 to 2026
$4.8M
Bayesian Approaches to Model Selection for Survival DataR01GM070335 · NIGMS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI IBRAHIM, JOSEPH G · 2003 to 2019
$4.0M
NCI NIH HHS CA16086NCI NIH HHS P30 CA016086NCI NIH HHS R01 CA112243NCI NIH HHS T32 CA106209NIEHS NIH HHS ES07017NIEHS NIH HHS ES10126NIEHS NIH HHS ES11391NIEHS NIH HHS P30 ES010126NIEHS NIH HHS T32 ES007017NIEHS NIH HHS U19 ES011391NIGMS NIH HHS R01 GM070335
6 · The paper itself

Abstract

Defects in DNA damage responses may underlie genetic instability and malignant progression in melanoma. Cultures of normal human melanocytes (NHMs) and melanoma lines were analyzed to determine whether global patterns of gene expression could predict the efficacy of DNA damage cell cycle checkpoints that arrest growth and suppress genetic instability. NHMs displayed effective G1 and G2 checkpoint responses to ionizing radiation-induced DNA damage. A majority of melanoma cell lines (11/16) displayed significant quantitative defects in one or both checkpoints. Melanomas with B-RAF mutations as a class displayed a significant defect in DNA damage G2 checkpoint function. In contrast the epithelial-like subtype of melanomas with wild-type N-RAS and B-RAF alleles displayed an effective G2 checkpoint but a significant defect in G1 checkpoint function. RNA expression profiling revealed that melanoma lines with defects in the DNA damage G1 checkpoint displayed reduced expression of p53 transcriptional targets, such as CDKN1A and DDB2, and enhanced expression of proliferation-associated genes, such as CDC7 and GEMININ. A Bayesian analysis tool was more accurate than significance analysis of microarrays for predicting checkpoint function using a leave-one-out method. The results suggest that defects in DNA damage checkpoints may be recognized in melanomas through analysis of gene expression.

Indexed as

DNA DamageGene Expression ProfilingCell Cycle ProteinsCell Line, TumorCells, CulturedChromosomal InstabilityCyclin-Dependent Kinase Inhibitor p21DNA-Binding ProteinsDNA Breaks, Double-StrandedG1 PhaseG2 PhaseGemininHumansMelanocytesMelanomaMutationBRAF protein, humanCDC7 protein, humanCDKN1A protein, humanCell Cycle ProteinsCyclin-Dependent Kinase Inhibitor p21DDB2 protein, humanDNA-Binding ProteinsGemininGMNN protein, humanProtein Serine-Threonine KinasesProto-Oncogene Proteins B-rafTumor Suppressor Protein p53

Identifiers

PMID17597816
PMCPMC2753794
OpenAlexW1981058260

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.