Evidence map›Paper›PMID 17592125›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2007

Intergenic variants of HBS1L-MYB are responsible for a major quantitative trait locus on chromosome 6q23 influencing fetal hemoglobin levels in adults.

Swee Lay Thein, Stephan Menzel, Xu Peng, Steve Best, Jie Jiang, James Close, Nicholas Silver, Ageliki Gerovasilli, Chen Ping, Masao Yamaguchi and 7 more

Registry-linked trialOpen access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT06019208 (Genomics and Personalized Medicine for All Though Artificial Intelligence in Haematological Diseases), which is not on this map. Cited by 153 papers, 3 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
153citing papers in PubMed, 3 pooled it
8.5field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT06019208 unknown statusnot on this mapstarted 2021, after this paper: background citation

Genomics and Personalized Medicine for All Though Artificial Intelligence in Haematological Diseases

TypeobservationalSponsorHospital Universitari Vall d'Hebron Research InstituteRan2021 to 2024Enrolled1,000ConditionsSickle Cell Disorders
3 · Its place in the literature

Who cites it

153 citing papers in PubMed, 3 syntheses or guidelines pooled it, 316 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Pooled it
  4. Trial
  5. Trial
  6. Trial
  7. Article
  8. Article
  9. Article
  10. Review
  11. Review
  12. Review
  13. Article
  14. Article
  15. Article
  16. Review
  17. MYB represses ζ-globin expression through upregulating ETO2.Acta biochimica et biophysica Sinica · 2025
    Article
  18. Article
  19. Article
  20. Review

93 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 7 institutions in 3 countries.

Swee Lay TheinKing's College London School of Medicine, Division of Gene and Cell Based Therapy, King's College Hospital, London SE5 9PJ, United Kingdom. sl.thein@kcl.ac.uk
Stephan Menzel
Xu Peng
Steve Best
Jie Jiang
James Close
Nicholas Silver
Ageliki Gerovasilli
Chen Ping
Masao Yamaguchi
Karin Wahlberg
Pinar Ulug
Tim D Spector
Chad Garner
Fumihiko Matsuda
Martin Farrall
Mark Lathrop
King's College Hospital · GBKing's College London · GBUniversity of Oxford · GBCommissariat à l'Énergie Atomique et aux Énergies Alternatives · FRGenopole (France) · FRSt Thomas' Hospital · GBUniversity of California, Irvine · US

Funding

Medical Research Council G0000111Wellcome Trust
6 · The paper itself

Abstract

Individual variation in fetal hemoglobin (HbF, alpha(2)gamma(2)) response underlies the remarkable diversity in phenotypic severity of sickle cell disease and beta thalassemia. HbF levels and HbF-associated quantitative traits (e.g., F cell levels) are highly heritable. We have previously mapped a major quantitative trait locus (QTL) controlling F cell levels in an extended Asian-Indian kindred with beta thalassemia to a 1.5-Mb interval on chromosome 6q23, but the causative gene(s) are not known. The QTL encompasses several genes including HBS1L, a member of the GTP-binding protein family that is expressed in erythroid progenitor cells. In this high-resolution association study, we have identified multiple genetic variants within and 5' to HBS1L at 6q23 that are strongly associated with F cell levels in families of Northern European ancestry (P = 10(-75)). The region accounts for 17.6% of the F cell variance in northern Europeans. Although mRNA levels of HBS1L and MYB in erythroid precursors grown in vitro are positively correlated, only HBS1L expression correlates with high F cell alleles. The results support a key role for the HBS1L-related genetic variants in HbF control and illustrate the biological complexity of the mechanism of 6q QTL as a modifier of fetal hemoglobin levels in the beta hemoglobinopathies.

Indexed as

Genetic VariationAdolescentAdultAgedChromosomes, Human, Pair 6DNA, IntergenicErythroid Precursor CellsFetal HemoglobinHumansMiddle AgedPolymorphism, Single NucleotideProto-Oncogene Proteins c-mybQuantitative Trait LociTwin Studies as TopicDNA, IntergenicFetal HemoglobinProto-Oncogene Proteins c-myb

Identifiers

PMID17592125
PMCPMC2040901
OpenAlexW2012020901

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.