Evidence map›Paper›PMID 17588939›Full record

ArticleThe Journal of biological chemistry2007

Molecular architecture and divalent cation activation of TvoK, a prokaryotic potassium channel.

Lyubov V Parfenova, Karin Abarca-Heidemann, Brittany M Crane, Brad S Rothberg

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.4field-weighted citation impact, top 39% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 15 citations in OpenAlex.

  1. Article
  2. Understanding the conformational motions of RCK gating rings.The Journal of general physiology · 2017
    Review
  3. Article
  4. Article
  5. Barium ions selectively activate BK channels via the Ca2+-bowl site.Proceedings of the National Academy of Sciences of the United States of America · 2012
    Article
  6. Article
  7. Ion channels in microbes.Physiological reviews · 2008
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Lyubov V ParfenovaDepartment of Physiology, University of Texas Health Science Center at San Antonio, San Antonio, Texas 78229, USA.
Karin Abarca-Heidemann
Brittany M Crane
Brad S Rothberg
The University of Texas Health Science Center at San Antonio · US

Funding

Structure and Function of Potassium ChannelsR01GM068523 · NIGMS · UNIVERSITY OF TEXAS HLTH SCIENCE CENTER · PI ROTHBERG, BRAD S. · 2004 to 2010
$1.9M
NIGMS NIH HHS GM68523NIGMS NIH HHS R01 GM068523
6 · The paper itself

Abstract

RCK (regulator of conductance of potassium) domains form a family of ligand-binding domains found in many prokaryotic K+ channels and transport proteins. Although many RCK domains contain an apparent nucleotide binding motif, some are known instead to bind Ca2+, which can then facilitate channel opening. Here we report on the molecular architecture and ligand activation properties of an RCK-containing potassium channel cloned from the prokaryote Thermoplasma volcanium. This channel, called TvoK, is of an apparent molecular mass and subunit composition that is consistent with the hetero-octameric configuration hypothesized for the related MthK (Methanobacterium thermoautotrophicum potassium) channel, in which four channel-tethered RCK domains coassemble with four soluble (untethered) RCK domains. The expression of soluble TvoK RCK subunits arises from an unconventional UUG start codon within the TvoK gene; silent mutagenesis of this alternative start codon abolishes expression of the soluble form of the TvoK RCK domain. Using single channel recording of purified, reconstituted TvoK, we found that the channel is activated by Ca2+ as well as Mg2+, Mn2+, and Ni2+. This non-selective divalent activation is in contrast with the activation properties of MthK, which is selectively activated by Ca2+. Transplantation of the TvoK RCK domain into MthK generates a channel that can be activated by Mg2+, illustrating that the Mg2+ binding site is likely contained within the RCK domain. We present a working hypothesis for TvoK gating in which the binding of either Ca2+ or Mg2+ can contribute approximately 5 kcal/mol toward stabilization of the open conformation of the channel.

Indexed as

Binding SitesCations, DivalentPotassium ChannelsProkaryotic CellsProtein ConformationProtein Structure, QuaternaryThermoplasmaCations, DivalentPotassium Channels

Identifiers

PMID17588939
PMCPMC4259576
OpenAlexW2001827472

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.