Evidence map›Paper›PMID 17586767›Full record

ArticleProtein science : a publication of the Protein Society2007

The 2.2 A resolution crystal structure of Bacillus cereus Nif3-family protein YqfO reveals a conserved dimetal-binding motif and a regulatory domain.

Michael H Godsey, George Minasov, Ludmilla Shuvalova, Joseph S Brunzelle, Ivan I Vorontsov, Frank R Collart, Wayne F Anderson

Open access · bronzeAbstract read
In one paragraph

Article in Protein science : a publication of the Protein Society, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
0.9field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 23 citations in OpenAlex.

  1. Article
  2. Article
  3. Frontiers in microbiology · 2019
    Article
  4. The Nif3-Family Protein YqfO03 fromInternational journal of molecular sciences · 2018
    Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Structure of putative CutA1 from Homo sapiens determined at 2.05 A resolution.Acta crystallographica. Section F, Structural biology and crystallization communications · 2008
    Article
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Michael H GodseyCollege of Theology, Arts and Sciences, Concordia University, Portland, OR 97211, USA.
George Minasov
Ludmilla Shuvalova
Joseph S Brunzelle
Ivan I Vorontsov
Frank R Collart
Wayne F Anderson
Northwestern University · USArgonne National Laboratory · USConcordia University · US

Funding

THE MIDWEST CENTER FOR STRUCTURAL GENOMICSP50GM062414 · NIGMS · UNIVERSITY OF CHICAGO · PI JOACHIMIAK, ANDRZEJ JOACHIMIAK · 2000 to 2004
$33.2M
NIGMS NIH HHS GM-62414NIGMS NIH HHS P50 GM062414
6 · The paper itself

Abstract

YqfO of Bacillus cereus is a member of the widespread Nif3 family of proteins, which has been highlighted as an important target for structural genomics. The N- and C-terminal domains are conserved across the family and contain a dimetal-binding motif in a putative active site. YqfO contains an insert in the middle of the protein, present in a minority of bacterial family members. The structure of YqfO was determined at a resolution of 2.2 A and reveals conservation of the putative active site. It also reveals the previously unknown structure of the insert, which despite extremely limited sequence conservation, bears great similarity to PII, CutA, and a number of other trimeric regulatory proteins. Our results suggest that this domain acts as a signal sensor to regulate the still-unknown catalytic activity of the more-conserved domains.

Indexed as

Amino Acid MotifsAmino Acid SequenceBacillus cereusBacterial ProteinsBinding SitesConserved SequenceCrystallography, X-RayMetalsModels, MolecularMolecular Sequence DataProtein BindingProtein Structure, SecondaryProtein Structure, TertiarySequence Homology, Amino AcidBacterial ProteinsMetals

Identifiers

PMID17586767
PMCPMC2206684
OpenAlexW2110230147

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.