Evidence map›Paper›PMID 17584765›Full record

ArticleHuman molecular genetics2007

An ancestral variant of Secretogranin II confers regulation by PHOX2 transcription factors and association with hypertension.

Gen Wen, Jennifer Wessel, Weidong Zhou, Georg B Ehret, Fangwen Rao, Mats Stridsberg, Sushil K Mahata, Peter M Gent, Madhusudan Das, Richard S Cooper and 5 more

Open access · bronzeAbstract read
In one paragraph

Article in Human molecular genetics, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
1.4field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 31 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Review
  6. ARMC 5 Variants and Risk of Hypertension in Blacks: MH- GRID Study.Journal of the American Heart Association · 2019
    Article
  7. Genetics of Hypertension in African Americans and Others of African Descent.International journal of molecular sciences · 2019
    Review
  8. Human-specific derived alleles of CD33 and other genes protect against postreproductive cognitive decline.Proceedings of the National Academy of Sciences of the United States of America · 2016
    Article
  9. Article
  10. Article
  11. Article
  12. Review
  13. Article
  14. Article
  15. Article
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  18. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 9 institutions in 3 countries.

Gen WenDepartment of Medicine, Moores UCSD Cancer Center, University of California, San Diego School of Medicine, 9500 Gilman Drive, La Jolla, CA 92093, USA.
Jennifer Wessel
Weidong Zhou
Georg B Ehret
Fangwen Rao
Mats Stridsberg
Sushil K Mahata
Peter M Gent
Madhusudan Das
Richard S Cooper
Aravinda Chakravarti
Huilin Zhou
Nicholas J Schork
Daniel T O'connor
Bruce A Hamilton
Institute of Biomedical Science · GBJohns Hopkins Medicine · USUniversity of California, San Diego · USCellular Research (United States) · USCenter for Human Genetics · USLoyola University Chicago · USScripps Research Institute · USUppsala University Hospital · SEVA San Diego Healthcare System · US

Funding

Trafficking of catecholamine storage vesicle proteinsP01HL058120 · NHLBI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI O'CONNOR, DANIEL T · 1999 to 2009
$18.5M
Hypertension PharmacogeneticsR01HL074730 · NHLBI · UNIVERSITY OF FLORIDA · PI JOHNSON, JULIE A. · 2003 to 2006
$3.4M
Genetics of the Sodium-Lithium CountertransportR01HL070137 · NHLBI · UNIV OF MED/DENT OF NJ-NJ MEDICAL SCHOOL · PI AVIV, ABRAHAM · 2004 to 2008
$2.9M
Sympathetic Outflow to Catecholamine Storage VesiclesR01DK060702 · NIDDK · VETERANS MEDICAL RESEARCH FDN/SAN DIEGO · PI O'CONNOR, DANIEL T · 2002 to 2006
$1.4M
Technology for the Analysis of Protein PhosphorylationK22HG002604 · NHGRI · LUDWIG INSTITUTE FOR CANCER RESEARCH · PI ZHOU, HUILIN · 2002 to 2005
$1.1M
NHGRI NIH HHS HG002604NHGRI NIH HHS K22 HG002604NHLBI NIH HHS HL070137NHLBI NIH HHS HL074730NHLBI NIH HHS P01 HL058120NHLBI NIH HHS P01 HL58120NHLBI NIH HHS R01 HL070137NHLBI NIH HHS R01 HL074730NIDDK NIH HHS DK60702NIDDK NIH HHS R01 DK060702
6 · The paper itself

Abstract

Granins regulate secretory vesicle formation in neuroendocrine cells and granin-derived peptides are co-released with neurotransmitters as modulatory signals at sympathetic sites. We report evidence for association between a regulatory polymorphism in Secretogranin II (SCG2) and hypertension in African-American subjects. The minor allele is ancestral in the human lineage and is associated with disease risk in two case-control studies and with elevated blood pressure in a separate familial study. Mechanistically, the ancestral allele acts as a transcriptional enhancer in cells that express endogenous Scg2, whereas the derived allele does not. ARIX (PHOX2A) and PHOX2B are identified as potential transactivating factors by oligonucleotide affinity chromatography and mass spectrometry and confirmed by chromatin immunoprecipitation. Each of these transcription factors preferentially binds the risk allele, both in vitro and in vivo. Population genetic considerations suggest positive selection of the protective allele within the human lineage. These results identify a common regulatory variation in SCG2 and implicate granin gene expression in the control of human blood pressure and susceptibility to hypertension.

Indexed as

Gene Expression RegulationAdultBase SequenceCase-Control StudiesCohort StudiesEnhancer Elements, GeneticEvolution, MolecularFemaleHomeodomain ProteinsHumansHypertensionMaleMiddle AgedMolecular Sequence DataPolymorphism, Single NucleotideSecretogranin IIHomeodomain ProteinsPHOX2A protein, humanSecretogranin II

Identifiers

PMID17584765
PMCPMC2695823
OpenAlexW2154333970

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.