ArticleMolecular genetics and genomics : MGG2007
RL-SAGE and microarray analysis of the rice transcriptome after Rhizoctonia solani infection.
Article in Molecular genetics and genomics : MGG, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.
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Who cites it
17 citing papers in PubMed, 81 citations in OpenAlex.
- Comparative transcriptome analysis of rice cultivars resistant and susceptible to Rhizoctonia solani AG1-IA.BMC genomics · 2022Article
- Comparison of leaf transcriptome in response to Rhizoctonia solani infection between resistant and susceptible rice cultivars.BMC genomics · 2020Article
- Transcriptome analysis reveals the host selection fitness mechanisms of the Rhizoctonia solani AG1IA pathogen.Scientific reports · 2017Article
- Comparative Transcriptome Analyses of Gene Expression Changes Triggered byFrontiers in plant science · 2017Article
- De novo Transcriptome Analysis of Rhizoctonia solani AG1 IA Strain Early Invasion in Zoysia japonica Root.Frontiers in microbiology · 2016Article
- Rice phenylalanine ammonia-lyase gene OsPAL4 is associated with broad spectrum disease resistance.Plant molecular biology · 2015Article
- Assembly and Analysis of Differential Transcriptome Responses of Hevea brasiliensis on Interaction with Microcyclus ulei.PloS one · 2015Article
- Co-expression of RCH10 and AGLU1 confers rice resistance to fungal sheath blight Rhizoctonia solani and blast Magnorpathe oryzae and reveals impact on seed germination.World journal of microbiology & biotechnology · 2014Article
- Fine mapping of qSB-11(LE), the QTL that confers partial resistance to rice sheath blight.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2013Article
- Article
- Identification of candidate genes in rice for resistance to sheath blight disease by whole genome sequencing.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2012Article
- Deep sequencing reveals the complex and coordinated transcriptional regulation of genes related to grain quality in rice cultivars.BMC genomics · 2011Article
- The B-3 ethylene response factor MtERF1-1 mediates resistance to a subset of root pathogens in Medicago truncatula without adversely affecting symbiosis with rhizobia.Plant physiology · 2010Article
- Proteomics of plant pathogenic fungi.Journal of biomedicine & biotechnology · 2010Review
- Advances in genetical genomics of plants.Current genomics · 2009Article
- Differentially expressed genes during malting and correlation with malting quality phenotypes in barley (Hordeum vulgare L.).TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2009Article
- A germin-like protein gene family functions as a complex quantitative trait locus conferring broad-spectrum disease resistance in rice.Plant physiology · 2009Article
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Authors and funding
15 authors at 4 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Sheath blight caused by the fungal pathogen Rhizoctonia solani is an emerging problem in rice production worldwide. To elucidate the molecular basis of rice defense to the pathogen, RNA isolated from R. solani-infected leaves of Jasmine 85 was used for both RL-SAGE library construction and microarray hybridization. RL-SAGE sequence analysis identified 20,233 and 24,049 distinct tags from the control and inoculated libraries, respectively. Nearly half of the significant tags (> or =2 copies) from both libraries matched TIGR annotated genes and KOME full-length cDNAs. Among them, 42% represented sense and 7% antisense transcripts, respectively. Interestingly, 60% of the library-specific (> or =10 copies) and differentially expressed (>4.0-fold change) tags were novel transcripts matching genomic sequence but not annotated genes. About 70% of the genes identified in the SAGE libraries showed similar expression patterns (up or down-regulated) in the microarray data obtained from three biological replications. Some candidate RL-SAGE tags and microarray genes were located in known sheath blight QTL regions. The expression of ten differentially expressed RL-SAGE tags was confirmed with RT-PCR. The defense genes associated with resistance to R. solani identified in this study are useful genomic materials for further elucidation of the molecular basis of the defense response to R. solani and fine mapping of target sheath blight QTLs.
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