Evidence map›Paper›PMID 17578919›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2007

Transposition of the rice miniature inverted repeat transposable element mPing in Arabidopsis thaliana.

Guojun Yang, Feng Zhang, C Nathan Hancock, Susan R Wessler

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 66 papers.

0numbers the graph read from it
0cells of the map it votes in
66citing papers in PubMed
15.6field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

66 citing papers in PubMed, 108 citations in OpenAlex.

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  15. Comprehensive survey of transposonFrontiers in plant science · 2022
    Article
  16. Development ofPlant direct · 2021
    Article
  17. Genomic diversity generated by a transposable element burst in a rice recombinant inbred population.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  18. Article
  19. Genome-wide analysis of short interspersed nuclear elements provides insight into gene and genome evolution in citrus.DNA research : an international journal for rapid publication of reports on genes and genomes · 2020
    Article
  20. Article

6 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Guojun YangDepartment of Plant Biology, University of Georgia, Athens, GA 30602, USA.
Feng Zhang
C Nathan Hancock
Susan R Wessler
University of Georgia · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

An active miniature inverted repeat transposable element (MITE), mPing, was discovered by computer-assisted analysis of rice genome sequence. The mPing element is mobile in rice cell culture and in a few rice strains where it has been amplified to >1,000 copies during recent domestication. However, determination of the transposase source and characterization of the mechanism of transposition have been hampered by the high copy number of mPing and the presence of several candidate autonomous elements in the rice genome. Here, we report that mPing is active in Arabidopsis thaliana, where its transposition is catalyzed by three sources of transposase from rice: the autonomous Ping and Pong elements and by a cDNA derived from a Ping transcript. In addition to transposase, the product of a second element-encoded ORF of unknown function is also required for mPing transposition. Excision of mPing in A. thaliana is usually precise, and transposed copies usually insert into unlinked sites in the genome that are preferentially in or near genes. As such, this will be a valuable assay system for the dissection of MITE transposition and a potentially powerful tagging system for gene discovery in eukaryotes.

Indexed as

ArabidopsisBase SequenceDNA Transposable ElementsGenes, PlantGenome, PlantMolecular Sequence DataOryzaPlants, Genetically ModifiedRNA, MessengerTransposasesDNA Transposable ElementsRNA, MessengerTransposases

Identifiers

PMID17578919
PMCPMC1904124
OpenAlexW2123362149

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.